Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0101
         (465 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    30   0.67 
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put...    30   0.89 
At5g07700.1 68418.m00883 myb family transcription factor (MYB76)...    29   1.2  
At1g76965.1 68414.m08961 glycine-rich protein                          29   1.5  
At4g14920.1 68417.m02292 PHD finger transcription factor, putative     28   2.7  
At2g13550.1 68415.m01494 expressed protein                             27   4.7  
At4g32040.1 68417.m04561 homeobox protein knotted-1 like 5 (KNAT...    27   8.3  

>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 309 RTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQN 425
           R+RVLRPS  + + + +S  FR  S     T   R A N
Sbjct: 37  RSRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75


>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 292 TFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFNGQLRT 426
           T+ T SG       R++L+      R+  D HD +  PFNG   T
Sbjct: 179 TYVTQSGSLMMSF-RVYLSNSDASIRYADDVHDRIWSPFNGSSHT 222


>At5g07700.1 68418.m00883 myb family transcription factor (MYB76)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 338

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 249 EAALY*NTNSLKRT*RTNIDQTRHRSXSASRPNPTRP 139
           E   Y NT+  KR     ID   H+  ++S PNP  P
Sbjct: 103 EVKNYWNTHLKKRLIDDGIDPVTHKPLASSNPNPVEP 139


>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 187 DPAPVRIRFPSKPDTPRSSEPILIPKLRIQFAD 89
           DP    + FP KP+ P    P  +P+L + F D
Sbjct: 92  DPGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At4g14920.1 68417.m02292 PHD finger transcription factor, putative
          Length = 1055

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 98  LDP*LRNKDWL*GPGRVGFGREADXDRCRVWSMFVRYVRFSE 223
           LD   R K +L G G +GFG +   +RC+    + R + F E
Sbjct: 170 LDIEKRRKPYLDGSGNIGFGNQGYRNRCK--KKYKRDMNFDE 209


>At2g13550.1 68415.m01494 expressed protein 
          Length = 181

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 192 DQTRHRSXSASRPNPTRPGPQSQSLFRSYGSNLPTSL 82
           D+TR RS + S+P P       QSL     +N+ T+L
Sbjct: 98  DKTRSRSGNQSKPQPHIQPKLKQSLKTGAANNIETNL 134


>At4g32040.1 68417.m04561 homeobox protein knotted-1 like 5 (KNAT5)
           / homeodomain containing protein 1 (H1) identical to
           homeobox protein knotted-1 like 5 (KNAT5) SP:P48002 from
           [Arabidopsis thaliana]
          Length = 383

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 183 RHRSXSASRPNPTRPGPQSQSLFRSYGSNLPTSLT 79
           RH +  + +P P R   ++ SL  +   NLPT+LT
Sbjct: 18  RHFTDQSQQPPPQRHFSETPSLVTASFLNLPTTLT 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,766,671
Number of Sequences: 28952
Number of extensions: 234240
Number of successful extensions: 693
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)