Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0100
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    31   0.011
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    31   0.011
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    31   0.011
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.2  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 30.7 bits (66), Expect = 0.011
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 523 PTPSCRWYHHVPRYRRQDAEGDHRPR 446
           PT SC  Y H+ RY+ +  +GD R R
Sbjct: 152 PTNSCMEYQHLHRYKEEALQGDGRMR 177


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 30.7 bits (66), Expect = 0.011
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 523 PTPSCRWYHHVPRYRRQDAEGDHRPR 446
           PT SC  Y H+ RY+ +  +GD R R
Sbjct: 152 PTNSCMEYQHLHRYKEEALQGDGRMR 177


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 30.7 bits (66), Expect = 0.011
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 523 PTPSCRWYHHVPRYRRQDAEGDHRPR 446
           PT SC  Y H+ RY+ +  +GD R R
Sbjct: 152 PTNSCMEYQHLHRYKEEALQGDGRMR 177


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 523 PTPSCRWYHHVPRYRRQDA 467
           P+PS RWY  V    R+ A
Sbjct: 260 PSPSFRWYKFVEGTTRKQA 278


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 483  YRGTWWYHRHDGVGVQVLTDVDVALHDGVVHG 578
            Y   W ++R  GVG  + +D+D  L   +V+G
Sbjct: 1828 YFTNWAWYRQ-GVGKYLPSDIDPDLCTHIVYG 1858


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 135  FYINLISFLFLLYTRDRCGSQRQM 64
            FY N+I  LF +     C S  Q+
Sbjct: 947  FYYNIIPILFFMLVCFTCKSNIQL 970


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 135  FYINLISFLFLLYTRDRCGSQRQM 64
            FY N+I  LF +     C S  Q+
Sbjct: 947  FYYNIIPILFFMLVCFTCKSNIQL 970


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 135  FYINLISFLFLLYTRDRCGSQRQM 64
            FY N+I  LF +     C S  Q+
Sbjct: 947  FYYNIIPILFFMLVCFTCKSNIQL 970


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 135  FYINLISFLFLLYTRDRCGSQRQM 64
            FY N+I  LF +     C S  Q+
Sbjct: 947  FYYNIIPILFFMLVCFTCKSNIQL 970


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,429
Number of Sequences: 336
Number of extensions: 2853
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)