Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0100
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 153 3e-38
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 70 3e-13
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 69 8e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 67 2e-12
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 60 2e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 43 5e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 41 2e-04
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 38 0.001
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 38 0.002
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.4
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 2.5
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 26 5.7
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 9.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 153 bits (370), Expect = 3e-38
Identities = 68/75 (90%), Positives = 74/75 (98%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 328
GGTTMYPGIADRMQKEI ALAPS++K+KI+APPERKYSVWIGGSILASLSTFQQMWISK+
Sbjct: 301 GGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 327 EYDESGPGIVHRKCF 283
EYDESGPGIV+RKCF
Sbjct: 361 EYDESGPGIVYRKCF 375
Score = 96.3 bits (229), Expect = 4e-21
Identities = 43/51 (84%), Positives = 45/51 (88%)
Frame = -2
Query: 671 QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN 519
QVITIGNERFR PEALFQPS LG+E+ GIHE YNSIMKCDVDIRKDLY N
Sbjct: 246 QVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGN 296
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 70.1 bits (164), Expect = 3e-13
Identities = 34/80 (42%), Positives = 54/80 (67%), Gaps = 6/80 (7%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWI 337
GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WI
Sbjct: 354 GGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWI 412
Query: 336 SKEEYDESGP---GIVHRKC 286
S++EY+E G ++ ++C
Sbjct: 413 SRQEYEEHGSDRLALIEKRC 432
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 590 GIHETVYNSIMKCDVDIRKDLYAN 519
GI + N I +CDVDIR L N
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNN 349
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 68.5 bits (160), Expect = 8e-13
Identities = 31/75 (41%), Positives = 51/75 (68%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 328
GG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ E
Sbjct: 306 GGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSE 365
Query: 327 EYDESGPGIVHRKCF 283
EY ++ ++ R+ F
Sbjct: 366 EY-KNDQNVIFRRRF 379
Score = 57.2 bits (132), Expect = 2e-09
Identities = 23/51 (45%), Positives = 33/51 (64%)
Frame = -2
Query: 671 QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN 519
Q IT+G E F PE LF P +G E+ G+H ++ SI+ D+D+R LY+N
Sbjct: 251 QTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSN 301
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 67.3 bits (157), Expect = 2e-12
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAP-STIKIKIIAPPER-KYSVWIGGSILASLSTFQQMWIS 334
GGT++ PG+++R+Q E+ LA S I + +VW GGSILASL FQ +W+S
Sbjct: 351 GGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVS 410
Query: 333 KEEYDESG 310
K+EYDE G
Sbjct: 411 KQEYDEVG 418
Score = 43.6 bits (98), Expect = 3e-05
Identities = 24/55 (43%), Positives = 28/55 (50%), Gaps = 9/55 (16%)
Frame = -2
Query: 656 GNERFRCPEALFQPSFLGMESC---------GIHETVYNSIMKCDVDIRKDLYAN 519
G ERFR E LF PSF S G+HE VY SI+ CD ++R L N
Sbjct: 292 GQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNN 346
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 60.5 bits (140), Expect = 2e-10
Identities = 25/49 (51%), Positives = 35/49 (71%)
Frame = -2
Query: 671 QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLY 525
+VI +G+ER+ CPE LFQP +G E G+ E ++++I DVDIRK LY
Sbjct: 246 RVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLY 294
Score = 51.6 bits (118), Expect = 1e-07
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 12/78 (15%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITAL--------APSTI---KIKIIAPPERKYSVWIGGSILAS- 364
GG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++LA
Sbjct: 301 GGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADI 360
Query: 363 LSTFQQMWISKEEYDESG 310
++ MW+SK E++E G
Sbjct: 361 MAQNDHMWVSKAEWEEYG 378
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 42.7 bits (96), Expect = 5e-05
Identities = 22/74 (29%), Positives = 37/74 (50%)
Frame = -1
Query: 510 VGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 331
+GG +PG R+ E+ +LAP+ ++K+ P + W S + L + I++
Sbjct: 326 IGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITR 384
Query: 330 EEYDESGPGIVHRK 289
EY E G I+ RK
Sbjct: 385 SEYSEHGANIMTRK 398
Score = 39.9 bits (89), Expect = 3e-04
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = -2
Query: 671 QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN 519
QV+ + NERF PE LF PS + + GI E V S+ +I+ L N
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLEN 322
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 328
GG PG+ R+++E+T++ P I + W G S + F+ +++E
Sbjct: 642 GGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTRE 701
Query: 327 EYDESGP 307
EY E GP
Sbjct: 702 EYLEKGP 708
Score = 33.1 bits (72), Expect = 0.037
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = -2
Query: 650 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN 519
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSN 637
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 37.9 bits (84), Expect = 0.001
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 14/86 (16%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAPSTIK--------------IKIIAPPERKYSVWIGGSIL 370
GG+T++ +R+Q+++ + I + +I+ ++ +VW GGS+L
Sbjct: 334 GGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLL 393
Query: 369 ASLSTFQQMWISKEEYDESGPGIVHR 292
A F +K +Y+E G I R
Sbjct: 394 AQTPEFGSYCHTKADYEEYGASIARR 419
Score = 35.5 bits (78), Expect = 0.007
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 665 ITIGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDLYAN 519
I +G ERF PE F P + + E V N + +D+RK LY N
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKN 329
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = -1
Query: 510 VGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILASLSTFQQMW 340
VGG +PG A +++ I + + I +I PP + ++ W G I + ++W
Sbjct: 536 VGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELW 595
Query: 339 ISKEEYDESGPGIVHRK 289
I ++ G ++ K
Sbjct: 596 IKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -1
Query: 390 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 289
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 465 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 355
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.8 bits (54), Expect = 5.7
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -1
Query: 258 GVCGVVLVRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDR 85
G+ + VR +A S +L P N SN TP+ + I K N+ S + L D
Sbjct: 568 GLDSIHSVRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDA 627
Query: 84 CGSQR 70
C R
Sbjct: 628 CALSR 632
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 439 DHQDQDHRSPREEVLRMDRWIHPG 368
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,365,722
Number of Sequences: 5004
Number of extensions: 43309
Number of successful extensions: 127
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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