Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0100
(672 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 157 5e-39
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 157 5e-39
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 157 5e-39
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 157 5e-39
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 157 5e-39
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 157 5e-39
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 157 5e-39
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 157 5e-39
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 157 5e-39
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 151 3e-37
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 149 1e-36
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 92 4e-19
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 83 2e-16
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 66 3e-11
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 52 4e-07
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 51 7e-07
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 45 6e-05
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 45 6e-05
AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical... 31 0.56
U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical pr... 27 9.2
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 157 bits (382), Expect = 5e-39
Identities = 72/75 (96%), Positives = 74/75 (98%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 328
GGTTMYPGIADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+
Sbjct: 302 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 361
Query: 327 EYDESGPGIVHRKCF 283
EYDESGP IVHRKCF
Sbjct: 362 EYDESGPSIVHRKCF 376
Score = 106 bits (255), Expect = 1e-23
Identities = 46/51 (90%), Positives = 49/51 (96%)
Frame = -2
Query: 671 QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN 519
QVIT+GNERFRCPEA+FQPSFLGMES GIHET YNSIMKCD+DIRKDLYAN
Sbjct: 247 QVITVGNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYAN 297
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 157 bits (382), Expect = 5e-39
Identities = 72/75 (96%), Positives = 74/75 (98%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 328
GGTTMYPGIADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+
Sbjct: 302 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 361
Query: 327 EYDESGPGIVHRKCF 283
EYDESGP IVHRKCF
Sbjct: 362 EYDESGPSIVHRKCF 376
Score = 107 bits (257), Expect = 7e-24
Identities = 47/51 (92%), Positives = 49/51 (96%)
Frame = -2
Query: 671 QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN 519
QVIT+GNERFRCPEALFQPSFLGMES GIHET YNSIMKCD+DIRKDLYAN
Sbjct: 247 QVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYAN 297
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 157 bits (382), Expect = 5e-39
Identities = 72/75 (96%), Positives = 74/75 (98%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 328
GGTTMYPGIADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+
Sbjct: 302 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 361
Query: 327 EYDESGPGIVHRKCF 283
EYDESGP IVHRKCF
Sbjct: 362 EYDESGPSIVHRKCF 376
Score = 106 bits (255), Expect = 1e-23
Identities = 46/51 (90%), Positives = 49/51 (96%)
Frame = -2
Query: 671 QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN 519
QVIT+GNERFRCPEA+FQPSFLGMES GIHET YNSIMKCD+DIRKDLYAN
Sbjct: 247 QVITVGNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYAN 297
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 157 bits (382), Expect = 5e-39
Identities = 72/75 (96%), Positives = 74/75 (98%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 328
GGTTMYPGIADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+
Sbjct: 302 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 361
Query: 327 EYDESGPGIVHRKCF 283
EYDESGP IVHRKCF
Sbjct: 362 EYDESGPSIVHRKCF 376
Score = 107 bits (257), Expect = 7e-24
Identities = 47/51 (92%), Positives = 49/51 (96%)
Frame = -2
Query: 671 QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN 519
QVIT+GNERFRCPEALFQPSFLGMES GIHET YNSIMKCD+DIRKDLYAN
Sbjct: 247 QVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYAN 297
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 157 bits (382), Expect = 5e-39
Identities = 72/75 (96%), Positives = 74/75 (98%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 328
GGTTMYPGIADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+
Sbjct: 302 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 361
Query: 327 EYDESGPGIVHRKCF 283
EYDESGP IVHRKCF
Sbjct: 362 EYDESGPSIVHRKCF 376
Score = 107 bits (257), Expect = 7e-24
Identities = 47/51 (92%), Positives = 49/51 (96%)
Frame = -2
Query: 671 QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN 519
QVIT+GNERFRCPEALFQPSFLGMES GIHET YNSIMKCD+DIRKDLYAN
Sbjct: 247 QVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYAN 297
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 157 bits (382), Expect = 5e-39
Identities = 72/75 (96%), Positives = 74/75 (98%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 328
GGTTMYPGIADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+
Sbjct: 302 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 361
Query: 327 EYDESGPGIVHRKCF 283
EYDESGP IVHRKCF
Sbjct: 362 EYDESGPSIVHRKCF 376
Score = 106 bits (255), Expect = 1e-23
Identities = 46/51 (90%), Positives = 49/51 (96%)
Frame = -2
Query: 671 QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN 519
QVIT+GNERFRCPEA+FQPSFLGMES GIHET YNSIMKCD+DIRKDLYAN
Sbjct: 247 QVITVGNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYAN 297
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 157 bits (382), Expect = 5e-39
Identities = 72/75 (96%), Positives = 74/75 (98%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 328
GGTTMYPGIADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+
Sbjct: 258 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 317
Query: 327 EYDESGPGIVHRKCF 283
EYDESGP IVHRKCF
Sbjct: 318 EYDESGPSIVHRKCF 332
Score = 107 bits (257), Expect = 7e-24
Identities = 47/51 (92%), Positives = 49/51 (96%)
Frame = -2
Query: 671 QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN 519
QVIT+GNERFRCPEALFQPSFLGMES GIHET YNSIMKCD+DIRKDLYAN
Sbjct: 203 QVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYAN 253
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 157 bits (382), Expect = 5e-39
Identities = 72/75 (96%), Positives = 74/75 (98%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 328
GGTTMYPGIADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+
Sbjct: 288 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 347
Query: 327 EYDESGPGIVHRKCF 283
EYDESGP IVHRKCF
Sbjct: 348 EYDESGPSIVHRKCF 362
Score = 107 bits (257), Expect = 7e-24
Identities = 47/51 (92%), Positives = 49/51 (96%)
Frame = -2
Query: 671 QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN 519
QVIT+GNERFRCPEALFQPSFLGMES GIHET YNSIMKCD+DIRKDLYAN
Sbjct: 233 QVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYAN 283
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 157 bits (382), Expect = 5e-39
Identities = 72/75 (96%), Positives = 74/75 (98%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 328
GGTTMYPGIADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+
Sbjct: 302 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 361
Query: 327 EYDESGPGIVHRKCF 283
EYDESGP IVHRKCF
Sbjct: 362 EYDESGPSIVHRKCF 376
Score = 107 bits (257), Expect = 7e-24
Identities = 47/51 (92%), Positives = 49/51 (96%)
Frame = -2
Query: 671 QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN 519
QVIT+GNERFRCPEALFQPSFLGMES GIHET YNSIMKCD+DIRKDLYAN
Sbjct: 247 QVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYAN 297
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 151 bits (367), Expect = 3e-37
Identities = 71/75 (94%), Positives = 73/75 (97%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 328
GGTTMYPGIADRMQKEITALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+
Sbjct: 302 GGTTMYPGIADRMQKEITALAP-TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 327 EYDESGPGIVHRKCF 283
EYDESGP IVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375
Score = 106 bits (255), Expect = 1e-23
Identities = 46/51 (90%), Positives = 49/51 (96%)
Frame = -2
Query: 671 QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN 519
QVIT+GNERFRCPEA+FQPSFLGMES GIHET YNSIMKCD+DIRKDLYAN
Sbjct: 247 QVITVGNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYAN 297
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 149 bits (362), Expect = 1e-36
Identities = 68/75 (90%), Positives = 72/75 (96%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 328
GGT+M+PGIADRMQKEI LAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+
Sbjct: 301 GGTSMFPGIADRMQKEIQHLAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 327 EYDESGPGIVHRKCF 283
EYDESGP IVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375
Score = 101 bits (242), Expect = 5e-22
Identities = 44/51 (86%), Positives = 46/51 (90%)
Frame = -2
Query: 671 QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN 519
QVITIGNERFRCPE LFQP+F+GME GIHET Y SIMKCDVDIRKDLYAN
Sbjct: 246 QVITIGNERFRCPEVLFQPAFIGMEGAGIHETTYQSIMKCDVDIRKDLYAN 296
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 91.9 bits (218), Expect = 4e-19
Identities = 41/77 (53%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWI 337
GG ++ G +R+ + P TIK+++ A P ERKY WIGGSIL SL TFQQMW+
Sbjct: 359 GGNSLILGFTERLNYALATKCPPTIKLRVFAAPTQAERKYGAWIGGSILGSLGTFQQMWV 418
Query: 336 SKEEYDESGPGIVHRKC 286
SK EYDESG IV +KC
Sbjct: 419 SKAEYDESGKSIVEKKC 435
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 83.0 bits (196), Expect = 2e-16
Identities = 35/75 (46%), Positives = 52/75 (69%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 328
GGTT++ G DR+ E+ +AP+ KI+I A ER WIGGSI+ASL TF++MW+ K+
Sbjct: 300 GGTTLFKGFGDRLLGEMRKIAPADGKIRISASQERNSLTWIGGSIVASLDTFRKMWLGKK 359
Query: 327 EYDESGPGIVHRKCF 283
EY++ G +H++ F
Sbjct: 360 EYEDMGASAMHKRFF 374
Score = 57.6 bits (133), Expect = 8e-09
Identities = 26/49 (53%), Positives = 32/49 (65%)
Frame = -2
Query: 665 ITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN 519
I I N FR PE LF+P +G E G+ V SIMKCDVD+R+ LY+N
Sbjct: 247 IEISNSLFRAPEVLFKPDLIGTEWPGMAHVVNQSIMKCDVDLRQTLYSN 295
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 65.7 bits (153), Expect = 3e-11
Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 13/79 (16%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITAL-----------APSTIKIKIIAPPERKYSVWIGGSILASL 361
GGTTMYPG+ R++KE+ L A KI+I APP RK+ V++GG++LA+L
Sbjct: 305 GGTTMYPGLPSRLEKELKQLYLDRVLHGNTDAFQKFKIRIEAPPSRKHMVFLGGAVLANL 364
Query: 360 --STFQQMWISKEEYDESG 310
Q W+SK+EY+E G
Sbjct: 365 MKDRDQDFWVSKKEYEEGG 383
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = -2
Query: 671 QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLY 525
+VI +G ERF PE LFQP + +E G+ E ++ I D+D R D Y
Sbjct: 250 RVIRLGGERFEAPEILFQPHLINVEKAGLSELLFGCIQASDIDTRLDFY 298
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 52.0 bits (119), Expect = 4e-07
Identities = 19/47 (40%), Positives = 32/47 (68%)
Frame = -2
Query: 659 IGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN 519
I N RF C E LF+P G+++ G+H+ ++ +I++C +D R+ LY N
Sbjct: 428 IDNSRFLCTEGLFKPKKWGLDTKGLHQLIHEAILQCPIDSRRTLYRN 474
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/61 (34%), Positives = 41/61 (67%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 328
GG ++ PGIA+++++E++ + P+TI ++ P R + ++G I+AS STF+ IS +
Sbjct: 479 GGASLMPGIAEKLEQELSTVVPNTIHTQVNISPWRYNAAYLGAQIVASASTFEDSCISLQ 538
Query: 327 E 325
+
Sbjct: 539 Q 539
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 51.2 bits (117), Expect = 7e-07
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 16/85 (18%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALA----------------PSTIKIKIIAPPERKYSVWIGGS 376
GG+TM+ A ++Q+++ L+ P I +++I+ ++Y+VW GGS
Sbjct: 330 GGSTMFKDFARKLQRDVKRLSDGRLQMSETLSGGRLKPKPIDVQVISHKMQRYAVWFGGS 389
Query: 375 ILASLSTFQQMWISKEEYDESGPGI 301
+LAS S F Q+ +K EY E GP I
Sbjct: 390 MLASTSEFYQVSHTKAEYMERGPSI 414
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -2
Query: 665 ITIGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDLYAN 519
+ +G ERF PE F P F E + I +T+ I +C +D+R+ LY N
Sbjct: 276 VDVGYERFLGPEIFFHPEFCNPEFTTPISDTIDTLIQQCPIDVRRGLYEN 325
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = -2
Query: 665 ITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN 519
I +G ERF PE LF PS + ++ CG+ E V SI +C +R L N
Sbjct: 263 IHLGVERFAIPEILFNPSDIDIDQCGVAEAVIESICQCPEALRPALAEN 311
Score = 35.5 bits (78), Expect = 0.035
Identities = 17/73 (23%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = -1
Query: 510 VGGTTMYPGIADRMQKEITALAPSTIKIKI---IAPPERKYSVWIGGSILASLSTFQQMW 340
+GG++ +PG +R+++E+ ++ P+ + + + P+ W G L L+ + W
Sbjct: 315 IGGSSCFPGFRERLEREVRSMLPAEYGLNVSNDVINPQT--HSWHCGQEL--LTASKVPW 370
Query: 339 ISKEEYDESGPGI 301
I+++++DE G +
Sbjct: 371 INRKDWDERGDSL 383
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = -2
Query: 665 ITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN 519
I +G ERF PE LF PS + ++ CG+ E V SI +C +R L N
Sbjct: 263 IHLGVERFAIPEILFNPSDIDIDQCGVAEAVIESICQCPEALRPALAEN 311
Score = 35.5 bits (78), Expect = 0.035
Identities = 17/73 (23%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = -1
Query: 510 VGGTTMYPGIADRMQKEITALAPSTIKIKI---IAPPERKYSVWIGGSILASLSTFQQMW 340
+GG++ +PG +R+++E+ ++ P+ + + + P+ W G L L+ + W
Sbjct: 315 IGGSSCFPGFRERLEREVRSMLPAEYGLNVSNDVINPQT--HSWHCGQEL--LTASKVPW 370
Query: 339 ISKEEYDESGPGI 301
I+++++DE G +
Sbjct: 371 INRKDWDERGDSL 383
>AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical
protein T24C4.7 protein.
Length = 798
Score = 31.5 bits (68), Expect = 0.56
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 511 CRWYHHV--PRYRRQDAEGDHRPRALDHQDQDHRSPREEVLR 392
CR+ H P+YRRQ L Q Q HR PRE +L+
Sbjct: 172 CRFMMHTKQPKYRRQVMHCSKSEHKLVLQTQKHRLPRERMLK 213
>U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical
protein C49H3.8 protein.
Length = 305
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITAL-APSTIKIKIIAP----PERK----YSVWIGGSILASL-S 358
GG + PG+ R+++EI + + KI +I E K + W+G S+L SL
Sbjct: 217 GGVSTIPGLMKRLEQEIQVIDEKNNSKIAVIVKFYQFSEIKNTPLFVSWLGASLLGSLRE 276
Query: 357 TFQQMWISKEEY 322
T ++ ++ EE+
Sbjct: 277 TIERKSLTLEEW 288
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,315,514
Number of Sequences: 27780
Number of extensions: 259981
Number of successful extensions: 777
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -