Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0100
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             121   7e-30
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.50 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.0  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   4.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.1  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  121 bits (291), Expect = 7e-30
 Identities = 56/58 (96%), Positives = 58/58 (100%)
 Frame = -1

Query: 507 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 334
           GGTTMYPGIADRMQKEITALAPST+KIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 76  GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133



 Score =  111 bits (267), Expect = 6e-27
 Identities = 49/51 (96%), Positives = 50/51 (98%)
 Frame = -2

Query: 671 QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN 519
           QVITIGNERFRCPEALFQPSFLGME+CGIHET YNSIMKCDVDIRKDLYAN
Sbjct: 21  QVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYAN 71


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 161 DGVRLDVQFSGITRYNVLTVAFRTRTSTTPHTPG 262
           D  +LD  F   T+ N + ++ R++ STT   PG
Sbjct: 354 DSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPG 387


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 570 QLHHEVRRRHP*GPVRQHRHVGGTTMYPG 484
           QL+ +V+  H   PV+QHR    +T   G
Sbjct: 266 QLNSDVQPGHGSPPVKQHRSSSASTTCSG 294


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +1

Query: 538 RMSTSHFMMELYT--VSWMPHDSIPRKEGWKR 627
           R     F+  L T    W+ +++I RK  W R
Sbjct: 18  RSENDPFLKRLITGDEKWVVYNNIKRKRSWSR 49


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +1

Query: 538 RMSTSHFMMELYT--VSWMPHDSIPRKEGWKR 627
           R     F+  L T    W+ +++I RK  W R
Sbjct: 139 RNENDPFLKRLITGDEKWVVYNNIKRKRSWSR 170


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 570 QLHHEVRRRHP*GPVRQHRH 511
           Q+HH++  +HP    +Q +H
Sbjct: 167 QMHHQMHTQHPHMQPQQGQH 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,876
Number of Sequences: 438
Number of extensions: 3130
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)