Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0098
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    32   0.060
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   3.9  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    26   5.2  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    26   5.2  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   5.2  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   6.9  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    25   6.9  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   6.9  

>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 32.3 bits (70), Expect = 0.060
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +2

Query: 170 ADIIDRAPLPPNRVSNETMKVVVFQRRSPKRSPTYATPLMSPYNARLESSSTG---SSFP 340
           A ++ R P   NR SN      +  RRSP  SP+   P+ +   +  + S+TG    + P
Sbjct: 312 ASMMSRTPNTLNRPSNYRSHSSMGTRRSPLNSPSQLDPISNENESDTDDSNTGLRNRTSP 371

Query: 341 ADSPKP 358
             +P P
Sbjct: 372 TAAPPP 377


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +2

Query: 191 PLPPNRVSNETMKVVVFQRRSPKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 364
           P P     N+T    + ++ + K++ T+   L S    RL +SS  SS PA   +  P
Sbjct: 242 PSPIEEDYNDTKARRITRKGTKKKTVTFDPSLESVPQKRLNASSNVSSNPAKKTRVSP 299


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 509 FFTLTFRALG-RITLRQHPRRPSQCFVLIRQ 598
           F T T R +G R+ L  +  RPS+C +++ Q
Sbjct: 98  FSTKTSRHVGGRLNLETYYSRPSECLMMLNQ 128


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 197 PPNRVSNETMKVVVFQRRSPKRSPTYATPLMSPYNARLESSSTGSSFPADSPK 355
           P  +VS+ ++      +  P    T +T    PY A  + ++TGSSF AD  K
Sbjct: 226 PRPQVSSSSITTNATYQNLPSPVST-STTSSQPYGAFHQPATTGSSFVADKWK 277


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 254 PKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 385
           P+RS + AT L SP  ++  SS+TG  + +        +V S D
Sbjct: 307 PRRSVSLATGLNSPSVSKPPSSATGPLYHSPQSSLTNSSVASAD 350


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 254 PKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 364
           P  SPT      + +N  L  +S   S  ADSP  +P
Sbjct: 168 PAFSPTSVERRFTEWNVPLRETSPSPSETADSPNKLP 204


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 36  DRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSAR-LERNTVRPPILST 185
           D     + LP+ + P    +   K+ ++F P+HH  + +  ++ +P   +T
Sbjct: 148 DESVIDIPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTT 198


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = +2

Query: 176 IIDRAPLPPNRVSNETMKVVVFQRRSPKRSPTYATPLMSPYNARLESSSTGSSFPADSPK 355
           +++ +PLP     + ++ V          +PT A+ L  P +A L SS   +    +SP+
Sbjct: 598 VLNTSPLPKTPEKDRSLNVT-----PSSSTPTPASVLAPPSSASLSSSKDANRSVPESPR 652

Query: 356 PVPLAVVSLD 385
                 V+LD
Sbjct: 653 REKKNRVTLD 662


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,645,161
Number of Sequences: 5004
Number of extensions: 54744
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)