Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0098
(633 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 34 0.097
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 34 0.097
U64834-1|AAL06027.1| 192|Caenorhabditis elegans Hypothetical pr... 32 0.39
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 32 0.39
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 30 1.2
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (... 30 1.2
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (... 30 1.2
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z81486-13|CAE47465.1| 611|Caenorhabditis elegans Hypothetical p... 27 8.4
AY221631-1|AAP97492.1| 611|Caenorhabditis elegans muscarinic ac... 27 8.4
AL034391-3|CAE47471.1| 611|Caenorhabditis elegans Hypothetical ... 27 8.4
AF022973-8|AAC25801.1| 116|Caenorhabditis elegans Hypothetical ... 27 8.4
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 33.9 bits (74), Expect = 0.097
Identities = 23/90 (25%), Positives = 38/90 (42%)
Frame = +2
Query: 107 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSPKRSPTYATPL 286
T+ + TSP T+GT APA++ P N S+ T SP +PT P+
Sbjct: 623 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNPTSPTTAPT-VPPV 681
Query: 287 MSPYNARLESSSTGSSFPADSPKPVPLAVV 376
+ S++T ++ + + P V
Sbjct: 682 TTTTPTTTTSTTTTTTTTTTTTQTTPTTPV 711
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 33.9 bits (74), Expect = 0.097
Identities = 23/90 (25%), Positives = 38/90 (42%)
Frame = +2
Query: 107 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSPKRSPTYATPL 286
T+ + TSP T+GT APA++ P N S+ T SP +PT P+
Sbjct: 679 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNPTSPTTAPT-VPPV 737
Query: 287 MSPYNARLESSSTGSSFPADSPKPVPLAVV 376
+ S++T ++ + + P V
Sbjct: 738 TTTTPTTTTSTTTTTTTTTTTTQTTPTTPV 767
>U64834-1|AAL06027.1| 192|Caenorhabditis elegans Hypothetical
protein F54D11.4 protein.
Length = 192
Score = 31.9 bits (69), Expect = 0.39
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +2
Query: 77 SSNRITREF*TATSVSATSPLCTLGTKHR--APADI-IDRAPLPPNRVSNETMKVVVFQR 247
+S+RITR ATSV++ +P TLG K + PA I A N V E + V
Sbjct: 10 TSSRITRRSQAATSVTSQTPK-TLGRKKQTTTPAKIESSTASAAKNPVKEEEI-VHSKPE 67
Query: 248 RSPKRSP 268
R+PKRSP
Sbjct: 68 RTPKRSP 74
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 31.9 bits (69), Expect = 0.39
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Frame = +2
Query: 59 TPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID-RAPLPPNRVSNETMKVV 235
TPRL + R T T + + SP T A + RAPLPP+ + + V
Sbjct: 290 TPRLTTA--RATTPLATTSRPTTPSPTTPRATTPLATTPLATTRAPLPPSPPPRTSKRPV 347
Query: 236 VFQRRSPK----RSPTYATPLMSPYNARLESSSTGS 331
+P+ R PT TP +P R ++T +
Sbjct: 348 TQAPTTPRATTTRRPTTTTPRPTPRRTRRPKTTTAA 383
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 239 FQRRSPKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR 391
F+R P P +ATPL S +L SSS+G P ++ P +SLDS+
Sbjct: 4248 FEREKPPAIPAHATPLESV--LKLGSSSSGEEAPRNALYDDP---ISLDSQ 4293
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 239 FQRRSPKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR 391
F+R P P +ATPL S +L SSS+G P ++ P +SLDS+
Sbjct: 4248 FEREKPPAIPAHATPLESV--LKLGSSSSGEEAPRNALYDDP---ISLDSQ 4293
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 239 FQRRSPKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR 391
F+R P P +ATPL S +L SSS+G P ++ P +SLDS+
Sbjct: 4248 FEREKPPAIPAHATPLESV--LKLGSSSSGEEAPRNALYDDP---ISLDSQ 4293
>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform b protein.
Length = 1069
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/79 (21%), Positives = 33/79 (41%)
Frame = +2
Query: 89 ITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSPKRSP 268
+T+E T S +A P TKHR +++ ++ + +K + +R+P
Sbjct: 581 VTKEIDTGASAAANVP----ETKHRVSGTVVEGKDSKSQLLATKKVKKPTIKNTEHRRAP 636
Query: 269 TYATPLMSPYNARLESSST 325
P+ P + E+ T
Sbjct: 637 ESTVPIGPPVEVKAEAIQT 655
>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform a protein.
Length = 1065
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/79 (21%), Positives = 33/79 (41%)
Frame = +2
Query: 89 ITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSPKRSP 268
+T+E T S +A P TKHR +++ ++ + +K + +R+P
Sbjct: 577 VTKEIDTGASAAANVP----ETKHRVSGTVVEGKDSKSQLLATKKVKKPTIKNTEHRRAP 632
Query: 269 TYATPLMSPYNARLESSST 325
P+ P + E+ T
Sbjct: 633 ESTVPIGPPVEVKAEAIQT 651
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 29.1 bits (62), Expect = 2.8
Identities = 25/92 (27%), Positives = 33/92 (35%)
Frame = +2
Query: 101 F*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSPKRSPTYAT 280
F T+VS SP T+ T P + PP + T V SP T
Sbjct: 469 FYPVTTVSTMSPPTTV-TVPTTPTPVPTTTNTPPANPTTATPTTVGTIGTSPTAPANLTT 527
Query: 281 PLMSPYNARLESSSTGSSFPADSPKPVPLAVV 376
P +P N SS+T + P + P V
Sbjct: 528 PTTAPVNP--TSSTTAPTAPVNPTSPTTAPTV 557
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/78 (24%), Positives = 32/78 (41%)
Frame = +2
Query: 143 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSPKRSPTYATPLMSPYNARLESSS 322
T+GT APA++ P N S+ T SP +PT P+ + S++
Sbjct: 514 TIGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNPTSPTTAPT-VPPVTTTTPTTTTSTT 572
Query: 323 TGSSFPADSPKPVPLAVV 376
T ++ + + P V
Sbjct: 573 TTTTTTTTTTQTTPTTPV 590
>Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical
protein Y57G11C.6 protein.
Length = 482
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 242 QRRSPKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAV 373
++ PKR ATP +SP + + S + D P P+ +V
Sbjct: 67 KKGKPKRDSKAATPALSPGSREMLSDHKKQTVEDDPPLPIATSV 110
>Z81486-13|CAE47465.1| 611|Caenorhabditis elegans Hypothetical
protein Y40H4A.1b protein.
Length = 611
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 170 ADIIDRAPLPPNRVSNETMKVVVFQRRSPKRSPTYATPLMSPYNARLESSSTGSSFPADS 349
+D++DR R S KV F RRS KR + + + S + R +++ G + DS
Sbjct: 274 SDVVDRPSTQSFRNSKMWKKVKKFSRRSMKRDVSSTSIIKSSGSMRKKNNQDG--YVEDS 331
Query: 350 PKP 358
P
Sbjct: 332 VTP 334
>AY221631-1|AAP97492.1| 611|Caenorhabditis elegans muscarinic
acetylcholine receptorlarge isoform protein.
Length = 611
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 170 ADIIDRAPLPPNRVSNETMKVVVFQRRSPKRSPTYATPLMSPYNARLESSSTGSSFPADS 349
+D++DR R S KV F RRS KR + + + S + R +++ G + DS
Sbjct: 274 SDVVDRPSTQSFRNSKMWKKVKKFSRRSMKRDVSSTSIIKSSGSMRKKNNQDG--YVEDS 331
Query: 350 PKP 358
P
Sbjct: 332 VTP 334
>AL034391-3|CAE47471.1| 611|Caenorhabditis elegans Hypothetical
protein Y40H4A.1b protein.
Length = 611
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 170 ADIIDRAPLPPNRVSNETMKVVVFQRRSPKRSPTYATPLMSPYNARLESSSTGSSFPADS 349
+D++DR R S KV F RRS KR + + + S + R +++ G + DS
Sbjct: 274 SDVVDRPSTQSFRNSKMWKKVKKFSRRSMKRDVSSTSIIKSSGSMRKKNNQDG--YVEDS 331
Query: 350 PKP 358
P
Sbjct: 332 VTP 334
>AF022973-8|AAC25801.1| 116|Caenorhabditis elegans Hypothetical
protein F25G6.8 protein.
Length = 116
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 227 KVVVFQRRSPKRSPTYATPLMSPYNARLESSSTGSSF 337
K+ F R S R P M PY+ R ++ GS+F
Sbjct: 16 KLTAFYRDSKIRGPKSVYVTMKPYDGRTKAMPKGSTF 52
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,956,426
Number of Sequences: 27780
Number of extensions: 321719
Number of successful extensions: 1041
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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