Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0098
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   7.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.9  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 250 SSLKNHYFHCFITYSVGRK 194
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 554 QHPRRPSQCFVLIRQSDSPCPCQ 622
           + P RPS C   +  ++SP  C+
Sbjct: 4   KQPNRPSYCTWELNATNSPHTCR 26


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 275 ATPLMSPYNARLESSSTGSSFP 340
           A  + SP   +   SSTGSS P
Sbjct: 347 AKQMASPEPPKSSESSTGSSIP 368


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +2

Query: 200 PNRVSNETMKVVVFQRRSPKR---SPTYATPLMSPYNARLESSSTGSSFPADSP 352
           P +++N+  ++     ++ KR   SP   TP+ + Y   +E+ +  S F  D+P
Sbjct: 4   PQKLANKFYRISPQILKNDKRIYLSPR--TPIKNVYKNNIETKNQLSPFNIDTP 55


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 344 QRGKKTLLSLTLVWHCKE 291
           + G KTLLS T +W  ++
Sbjct: 231 KNGMKTLLSETDIWEVEQ 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,943
Number of Sequences: 438
Number of extensions: 4080
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)