Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0098
(633 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 31 0.64
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 30 1.5
At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family... 29 1.9
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot... 29 2.6
At5g27070.1 68418.m03230 MADS-box family protein contains Pfam p... 29 3.4
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si... 29 3.4
At2g35020.1 68415.m04296 UTP--glucose-1-phosphate uridylyltransf... 28 4.5
At3g62370.1 68416.m07006 expressed protein 28 5.9
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 28 5.9
At1g63470.1 68414.m07177 DNA-binding family protein contains a A... 28 5.9
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 27 7.8
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 7.8
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 27 7.8
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 27 7.8
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 31.1 bits (67), Expect = 0.64
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +2
Query: 131 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSPK 259
S LC LG+ R PAD I+ L R+ M +V R SPK
Sbjct: 54 SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPK 95
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 251 SPKRSPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 370
+P SPT + + SP A ++ + +S P +SPK P P++
Sbjct: 37 APTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77
>At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family
protein identical to hydroxyproline-rich glycoprotein
[Arabidopsis thaliana] gi|9293881|dbj|BAB01784
Length = 532
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 191 PLPP---NRVSNETMKVVVFQRRSPKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPV 361
P+PP R++N + F R SP SP YA+P P S+ +P SP+ +
Sbjct: 428 PMPPAKAGRITNAYVSSFPFIR-SPSHSPQYASPAAYPSPPTTVYSNRSPPYPY-SPEII 485
Query: 362 P 364
P
Sbjct: 486 P 486
>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
similar to SP|P22418 Fructose-1,6-bisphosphatase,
chloroplast precursor (EC 3.1.3.11)
(D-fructose-1,6-bisphosphate 1-phosphohydrolase)
(FBPase) {Spinacia oleracea}; contains Pfam profile
PF00316: fructose-1,6-bisphosphatase
Length = 404
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 275 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 385
A+ + SP+N+ L S SS +D P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141
>At5g27070.1 68418.m03230 MADS-box family protein contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain); MADS-box protein
AGL53
Length = 287
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 116 SVSATSPLCTLGTKHRAPADIIDRAPLP-PNRVSNETMKVVVFQRRSPKRSPTYATPLMS 292
SVS+ LG + D P+ P ++ +T V Q + ++P++A P+M
Sbjct: 225 SVSSFDQSALLGEQGSGLGSNFDLPPMVFPPQMQTQTPLVPFDQFAAWNQAPSFADPMMF 284
Query: 293 PYN 301
PYN
Sbjct: 285 PYN 287
>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
similarity to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501
Length = 545
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 43 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 159
+P SNS P +VL + A + GD H TT+H W+ET
Sbjct: 5 LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45
>At2g35020.1 68415.m04296 UTP--glucose-1-phosphate
uridylyltransferase family protein similar to SP|Q16222
UDP-N-acetylhexosamine pyrophosphorylase (Antigen X)
{Homo sapiens}; contains Pfam profile PF01704:
UTP--glucose-1-phosphate uridylyltransferase
Length = 502
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 520 QREEFKQARVNGGSNYDSLKVAKCLVI*LVTR 425
+ EEF + GSNYD+ + A+ LV+ L TR
Sbjct: 421 REEEFAPVKNANGSNYDTPESARLLVLRLHTR 452
>At3g62370.1 68416.m07006 expressed protein
Length = 361
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 58 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 153
N+ PG + P G NG +RF H+ ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 242 QRRSPKR-SPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 364
++ SPK+ +P P P + + ESS P +SPKP P
Sbjct: 486 KQESPKQEAPKPEQPKPKPESPKQESSKQEPPKPEESPKPEP 527
>At1g63470.1 68414.m07177 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 378
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +2
Query: 203 NRVSNETMKVVVFQRRSPKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLA 370
N +N+T+K + ++ P S TP +P A T +FPA P++
Sbjct: 300 NNNNNKTIKQEIKPKQEPTNSEMETTPGSAPEAAASTGQHTPQNFPAQGMSGWPVS 355
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 233 VVFQRRSPKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 364
+ F + P P P SP + R S GSS + SP P+P
Sbjct: 31 ISFSLKQPPPQPP--EPPESPPDLRRPEKSIGSSSSSSSPSPIP 72
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 143 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 238
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 170 ADIIDRAPLP-PNRVSNETMKVVVFQRRSPKRSPTYATPLMSPYNARLES 316
AD R+P P R +++ + ++RR +RSPTY+ P P + R S
Sbjct: 503 ADQKSRSPSKSPARSRSKSKSPISYRRR--RRSPTYSPPFRRPRSHRSRS 550
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 461 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKK 330
G +P + +SD + INE+ P +AK +E + GK+
Sbjct: 70 GGGLPNNGVSDTNSQINEVTVTP-QVIAKETVKENGLQKNGGKR 112
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,339,363
Number of Sequences: 28952
Number of extensions: 311057
Number of successful extensions: 888
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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