Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0094
         (561 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q00SF8 Cluster: GDP dissociation inhibitor-common tobac...    38   0.12 
UniRef50_Q189C6 Cluster: Putative signaling protein; n=1; Clostr...    37   0.37 
UniRef50_A2G9W5 Cluster: GDP dissociation inhibitor family prote...    35   1.1  
UniRef50_P31150 Cluster: Rab GDP dissociation inhibitor alpha; n...    35   1.1  
UniRef50_A6SLT8 Cluster: Secretory pathway Rab GDP dissociation ...    33   4.6  
UniRef50_UPI0001509F2E Cluster: Phosphatidylinositol 3- and 4-ki...    32   8.0  

>UniRef50_Q00SF8 Cluster: GDP dissociation inhibitor-common tobacco;
           n=1; Ostreococcus tauri|Rep: GDP dissociation
           inhibitor-common tobacco - Ostreococcus tauri
          Length = 432

 Score = 38.3 bits (85), Expect = 0.12
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = -2

Query: 560 DATTHFETTCLDVLKIYNMVLGKNL 486
           DATTHFETT  DV+ IY  + GK+L
Sbjct: 394 DATTHFETTVRDVIDIYKRITGKDL 418


>UniRef50_Q189C6 Cluster: Putative signaling protein; n=1;
           Clostridium difficile 630|Rep: Putative signaling
           protein - Clostridium difficile (strain 630)
          Length = 392

 Score = 36.7 bits (81), Expect = 0.37
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 382 NKQLN-NKQYTYYFFMRPLSYLLILFTKFQLDFREIKFF 495
           NK +  +K Y Y F ++PL++L+I+FTK  L    I F+
Sbjct: 30  NKNITIHKNYKYIFLIKPLTFLIIIFTKLPLPLYYILFY 68


>UniRef50_A2G9W5 Cluster: GDP dissociation inhibitor family protein;
           n=1; Trichomonas vaginalis G3|Rep: GDP dissociation
           inhibitor family protein - Trichomonas vaginalis G3
          Length = 439

 Score = 35.1 bits (77), Expect = 1.1
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -2

Query: 560 DATTHFETTCLDVLKIYNMVLGK 492
           D TTHFETT  +VLK+Y  ++GK
Sbjct: 408 DPTTHFETTIDEVLKLYEEIMGK 430


>UniRef50_P31150 Cluster: Rab GDP dissociation inhibitor alpha;
           n=188; Eukaryota|Rep: Rab GDP dissociation inhibitor
           alpha - Homo sapiens (Human)
          Length = 447

 Score = 35.1 bits (77), Expect = 1.1
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -2

Query: 560 DATTHFETTCLDVLKIYNMVLG 495
           DATTHFETTC D+  IY  + G
Sbjct: 405 DATTHFETTCNDIKDIYKRMAG 426


>UniRef50_A6SLT8 Cluster: Secretory pathway Rab GDP dissociation
           inhibitor; n=2; Sclerotiniaceae|Rep: Secretory pathway
           Rab GDP dissociation inhibitor - Botryotinia fuckeliana
           B05.10
          Length = 471

 Score = 33.1 bits (72), Expect = 4.6
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 560 DATTHFETTCLDVLKIYNMVLGKNLI--SLKSSWNLV 456
           DAT+HFETT  DV  IY    G +L+   L+   NLV
Sbjct: 431 DATSHFETTTDDVKDIYRRAEGHDLVVEGLREGTNLV 467


>UniRef50_UPI0001509F2E Cluster: Phosphatidylinositol 3- and
           4-kinase family protein; n=1; Tetrahymena thermophila
           SB210|Rep: Phosphatidylinositol 3- and 4-kinase family
           protein - Tetrahymena thermophila SB210
          Length = 768

 Score = 32.3 bits (70), Expect = 8.0
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +1

Query: 319 KLLNYLNMKYYKVTIH*GFSLNKQLNNKQYTYYFFMRPLSYLLI 450
           KLL YL + Y  + +H  F +NK  N  +    FFM  L YL I
Sbjct: 47  KLLKYLYLFYEYIGVH-DFIINKLYNYSEAELNFFMTQLCYLCI 89


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 491,804,445
Number of Sequences: 1657284
Number of extensions: 8827674
Number of successful extensions: 15296
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15295
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)