Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0094
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    31   0.12 
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    27   1.9  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    27   1.9  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   7.6  

>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 560 DATTHFETTCLDVLKIYNMVLGKNLI 483
           DAT+HFET   DV  IY  + G +L+
Sbjct: 405 DATSHFETLTCDVRDIYKRMTGTDLV 430


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 183 SAQVKSCLYVIL*LICIPIW 124
           +  + + L+ IL L+CIPIW
Sbjct: 242 TCSISAALFFILLLVCIPIW 261


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 183 SAQVKSCLYVIL*LICIPIW 124
           +  + + L+ IL L+CIPIW
Sbjct: 232 TCSISAALFFILLLVCIPIW 251


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 68  MNAHYFNCVRS*IKLHYENKK 6
           + AHY +CV S I   Y++KK
Sbjct: 717 LRAHYQDCVSSTIDRQYQSKK 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,595
Number of Sequences: 5004
Number of extensions: 41955
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)