Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0094
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-33|CAJ44242.1|  459|Caenorhabditis elegans Hypothetical p...    34   0.080
Z99281-32|CAB16511.1|  444|Caenorhabditis elegans Hypothetical p...    34   0.080
U00002-1|AAA17051.1|  444|Caenorhabditis elegans rabGDI protein.       34   0.080
AC006832-2|AAO38580.1|  366|Caenorhabditis elegans Hypothetical ...    29   3.0  
AC006832-1|AAO38581.1|  376|Caenorhabditis elegans Hypothetical ...    29   3.0  
AL032655-5|CAA21723.1|  360|Caenorhabditis elegans Hypothetical ...    28   4.0  
U39650-5|AAK39185.2|  632|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF024500-6|AAB70361.1|  357|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z99281-33|CAJ44242.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57G11C.10b protein.
          Length = 459

 Score = 33.9 bits (74), Expect = 0.080
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 560 DATTHFETTCLDVLKIY 510
           DATTHFETTC DVL ++
Sbjct: 421 DATTHFETTCKDVLNMF 437


>Z99281-32|CAB16511.1|  444|Caenorhabditis elegans Hypothetical
           protein Y57G11C.10a protein.
          Length = 444

 Score = 33.9 bits (74), Expect = 0.080
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 560 DATTHFETTCLDVLKIY 510
           DATTHFETTC DVL ++
Sbjct: 406 DATTHFETTCKDVLNMF 422


>U00002-1|AAA17051.1|  444|Caenorhabditis elegans rabGDI protein.
          Length = 444

 Score = 33.9 bits (74), Expect = 0.080
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 560 DATTHFETTCLDVLKIY 510
           DATTHFETTC DVL ++
Sbjct: 406 DATTHFETTCKDVLNMF 422


>AC006832-2|AAO38580.1|  366|Caenorhabditis elegans Hypothetical
           protein ZK355.2a protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 244 FQNIVGWLLFLSLIFISVELVCTS*KLFICYFVTDMHSNMVH 119
           F+ ++GW   L+L     + +     L +CYF  D+ S+M+H
Sbjct: 103 FEWLIGWNTQLALFLSYTKAISL---LIVCYFYLDIASSMMH 141


>AC006832-1|AAO38581.1|  376|Caenorhabditis elegans Hypothetical
           protein ZK355.2b protein.
          Length = 376

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 244 FQNIVGWLLFLSLIFISVELVCTS*KLFICYFVTDMHSNMVH 119
           F+ ++GW   L+L     + +     L +CYF  D+ S+M+H
Sbjct: 113 FEWLIGWNTQLALFLSYTKAISL---LIVCYFYLDIASSMMH 151


>AL032655-5|CAA21723.1|  360|Caenorhabditis elegans Hypothetical
           protein Y6B3B.10 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 373 FSLNKQLNNKQYTYYFFMRPLSYLL--ILFTKFQLDFREIKFFPSTM 507
           F L K+ N + Y YYF M   +++L  I++  F+L +   K   +T+
Sbjct: 231 FYLKKRTNRQYYKYYFLMGNAAFILFAIIWVIFRLYWYTCKLLYATI 277


>U39650-5|AAK39185.2|  632|Caenorhabditis elegans Hypothetical
           protein C25A11.2 protein.
          Length = 632

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 382 NKQLNNKQYTYYFFMRPLSYLLILFTKFQLDFREI 486
           N + +  Q+T+Y    P  YLLI    FQ++ R++
Sbjct: 341 NVKSHTSQFTFYLENSPNGYLLIAGGCFQMESRQL 375


>AF024500-6|AAB70361.1|  357|Caenorhabditis elegans Hypothetical
           protein K06H6.1 protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 334 LNMKYYKVTIH*GFSLNKQLNNKQY-TY-YFFMRP 432
           LN++ YKV  H GF   ++LN   Y T+ Y  +RP
Sbjct: 38  LNLQEYKVKTHKGFITMEELNENVYKTFGYKIIRP 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,963,590
Number of Sequences: 27780
Number of extensions: 229611
Number of successful extensions: 366
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)