Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0094
         (561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2) i...    40   0.002
At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1) i...    39   0.002
At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putativ...    37   0.008
At5g20120.1 68418.m02395 expressed protein                             27   6.5  
At4g36550.1 68417.m05190 U-box domain-containing protein low sim...    27   8.6  

>At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2)
           identical to Rab GDP dissociation inhibitor AtGDI2
           [Arabidopsis thaliana] GI:2446981
          Length = 444

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = -2

Query: 560 DATTHFETTCLDVLKIYNMVLGKNL 486
           DATTHFETT  DVL +Y ++ GK L
Sbjct: 406 DATTHFETTVADVLNMYTLITGKQL 430


>At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1)
           identical to GDP dissociation inhibitor [Arabidopsis
           thaliana] GI:1655424
          Length = 445

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = -2

Query: 560 DATTHFETTCLDVLKIYNMVLGKNL 486
           DATTHF+TT +DVL +Y ++ GK L
Sbjct: 406 DATTHFDTTVVDVLNMYKLITGKEL 430


>At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putative
           strong similarity to GDP dissociation inhibitor protein
           OsGDI1 [Oryza sativa] GI:2384758; contains Pfam profile
           PF00996: GDP dissociation inhibitor
          Length = 365

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = -2

Query: 560 DATTHFETTCLDVLKIYNMVLGKNL 486
           DATTHFE+T +DVL +Y  + GK L
Sbjct: 326 DATTHFESTVVDVLDMYTKITGKTL 350


>At5g20120.1 68418.m02395 expressed protein 
          Length = 188

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 166 LFICYFVTDMHSNMVHLLMQ 107
           +FI YF  D HSNM+H+L++
Sbjct: 63  VFIVYF-GDRHSNMIHILLR 81


>At4g36550.1 68417.m05190 U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 577

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 495 EEFDFSKVKLELGEEDQ*ITERSHEKIIC 409
           ++F ++ +KL+L   +  +TER   KIIC
Sbjct: 15  KDFHYAALKLQLSTPEAIVTERRSLKIIC 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,732,416
Number of Sequences: 28952
Number of extensions: 189310
Number of successful extensions: 291
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)