Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0093
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 172 2e-44
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 100 2e-22
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 99 5e-22
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 95 6e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 68 8e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 64 1e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 54 1e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 41 1e-04
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.19
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 30 0.26
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 29 0.59
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.2
SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S... 25 7.3
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc... 25 7.3
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.6
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 25 9.6
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 25 9.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 172 bits (419), Expect = 2e-44
Identities = 76/85 (89%), Positives = 81/85 (95%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FET
Sbjct: 67 LKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFET 126
Query: 435 FNSPAMYVAIQAVLSLYDSGRTTGM 509
FN+PA YVAIQAVLSLY SGRTTG+
Sbjct: 127 FNAPAFYVAIQAVLSLYASGRTTGI 151
Score = 130 bits (313), Expect = 2e-31
Identities = 57/64 (89%), Positives = 63/64 (98%)
Frame = +1
Query: 61 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 240
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 241 RGIL 252
RGIL
Sbjct: 62 RGIL 65
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 100 bits (239), Expect = 2e-22
Identities = 42/85 (49%), Positives = 64/85 (75%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
+KYP+E+GII ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE
Sbjct: 67 VKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFER 126
Query: 435 FNSPAMYVAIQAVLSLYDSGRTTGM 509
+ +YVAIQAVLSLY G ++G+
Sbjct: 127 YGFGGVYVAIQAVLSLYAQGLSSGV 151
Score = 56.8 bits (131), Expect = 2e-09
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Frame = +1
Query: 73 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 246
A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 247 IL 252
+L
Sbjct: 64 LL 65
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 98.7 bits (235), Expect = 5e-22
Identities = 42/76 (55%), Positives = 52/76 (68%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
L YPI HG I NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE+
Sbjct: 90 LDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFES 149
Query: 435 FNSPAMYVAIQAVLSL 482
FN +Y+A+QAVL+L
Sbjct: 150 FNCAGLYIAVQAVLAL 165
Score = 42.7 bits (96), Expect = 3e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 79 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 228
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 95.1 bits (226), Expect = 6e-21
Identities = 43/86 (50%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 431
++ PIE GII NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +E
Sbjct: 71 IQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYE 130
Query: 432 TFNSPAMYVAIQAVLSLYDSGRTTGM 509
T N PA+ ++Q VL+LY S RTTG+
Sbjct: 131 TLNVPALSFSLQPVLALYASARTTGI 156
Score = 76.2 bits (179), Expect = 3e-15
Identities = 34/62 (54%), Positives = 44/62 (70%)
Frame = +1
Query: 67 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 246
D + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Query: 247 IL 252
+L
Sbjct: 68 LL 69
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 68.1 bits (159), Expect = 8e-13
Identities = 31/83 (37%), Positives = 46/83 (55%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
+K I +G + NWD +W + +L+ P EHP+L+TE NP NR K + MFE+
Sbjct: 65 IKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFES 124
Query: 435 FNSPAMYVAIQAVLSLYDSGRTT 503
PA Y+A Q + + SG+ T
Sbjct: 125 LRCPATYLAKQETCAAFASGKGT 147
Score = 40.7 bits (91), Expect = 1e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 64 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 165
D+V+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 64.1 bits (149), Expect = 1e-11
Identities = 28/74 (37%), Positives = 45/74 (60%)
Frame = +3
Query: 264 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 443
P E +I+NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N+
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 444 PAMYVAIQAVLSLY 485
P++ I + S Y
Sbjct: 145 PSVAYGIDGLFSFY 158
Score = 36.7 bits (81), Expect = 0.002
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +1
Query: 49 FKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 174
F+ +D+ LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 18 FQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 54.4 bits (125), Expect = 1e-08
Identities = 23/79 (29%), Positives = 45/79 (56%)
Frame = +3
Query: 273 HGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAM 452
+GII +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 453 YVAIQAVLSLYDSGRTTGM 509
Y+ QAV + + ++T +
Sbjct: 134 YLTKQAVCVAFANSKSTAL 152
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +1
Query: 64 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 234
+++ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 40.7 bits (91), Expect = 1e-04
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Frame = +3
Query: 249 PHLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMT 416
P+ PI+ G + +W+ ++ W H Y+ L P + +PV L +RE T
Sbjct: 108 PNEIQPIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELAT 166
Query: 417 QIMFETFNSPAMYVAIQAVLSLYDSGRTTGM 509
Q FE P +A + ++ LY G G+
Sbjct: 167 QFFFEECQVPGFTIAYEPLMGLYAIGILHGL 197
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 30.3 bits (65), Expect = 0.19
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 324 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNSPAM---YVAIQ 467
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N+P + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 29.9 bits (64), Expect = 0.26
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 124 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 246
G+ PRA F ++ P H G+++ M KD G+E S +G
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKG 540
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 28.7 bits (61), Expect = 0.59
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Frame = +3
Query: 270 EHGIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETFNS 443
E G + +W +W N + P ++ +LLT+ + Q++FE F
Sbjct: 64 EKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLVFEEFQF 123
Query: 444 PAMYVAIQAVLSLYDSGRTT 503
A A L +D G T
Sbjct: 124 DAYLPCTPAELIPWDHGSFT 143
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 79 LVVDNGSGMCKAGFAG 126
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 366 LLTEAPLNPKANREKMTQIMFETFN 440
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 1|||Manual
Length = 112
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 541 RCGDTISGVEHIPVVRPESYS 479
RCGDT ++ IP +RP ++
Sbjct: 43 RCGDTGVPLQGIPALRPREFA 63
>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 111
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 541 RCGDTISGVEHIPVVRPESYS 479
RCGDT ++ IP +RP ++
Sbjct: 43 RCGDTGVPLQGIPALRPREFA 63
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 9.6
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +1
Query: 91 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 243
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = -1
Query: 517 VEHIPVVRPESYSESTAWIATYMAGELKVSNMIWVIFSLLALGLRGAS 374
V+H+ + + S W+ + EL +SN+I + + +A G++G S
Sbjct: 401 VKHLQMEGVDFLQFSFRWMNCLLMRELSISNIIRMWDTYMAEGVQGFS 448
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = -3
Query: 287 GDDTVLDGVLQVRIPLLLWASSPT*ESFWPIPTITPWW 174
GDD L G R +LW P + P+P + W
Sbjct: 94 GDDATLSGETIKRAAAILWHKIPEYQD-QPVPNFSNGW 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,199
Number of Sequences: 5004
Number of extensions: 47798
Number of successful extensions: 173
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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