Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0093
(547 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 182 1e-46
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 182 1e-46
SB_56| Best HMM Match : Actin (HMM E-Value=0) 182 1e-46
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 182 1e-46
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 182 1e-46
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 137 5e-33
SB_54| Best HMM Match : Actin (HMM E-Value=0) 101 3e-22
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 1e-21
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 84 6e-17
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 72 3e-13
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 59 2e-09
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 56 2e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 56 2e-08
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 7e-07
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 3e-05
SB_25667| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.038
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 31 0.81
SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6) 30 1.1
SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7) 29 1.9
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_35006| Best HMM Match : PT (HMM E-Value=3.4) 29 2.5
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 29 3.3
SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 28 5.7
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 28 5.7
SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085) 28 5.7
SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9) 28 5.7
SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 27 7.6
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 182 bits (444), Expect = 1e-46
Identities = 82/85 (96%), Positives = 84/85 (98%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 435 FNSPAMYVAIQAVLSLYDSGRTTGM 509
FNSPAMYVAIQAVLSLY SGRTTG+
Sbjct: 128 FNSPAMYVAIQAVLSLYASGRTTGI 152
Score = 136 bits (329), Expect = 1e-32
Identities = 63/66 (95%), Positives = 65/66 (98%)
Frame = +1
Query: 55 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 234
M DD++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 235 SKRGIL 252
SKRGIL
Sbjct: 61 SKRGIL 66
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 182 bits (444), Expect = 1e-46
Identities = 82/85 (96%), Positives = 84/85 (98%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 67 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 435 FNSPAMYVAIQAVLSLYDSGRTTGM 509
FNSPAMYVAIQAVLSLY SGRTTG+
Sbjct: 127 FNSPAMYVAIQAVLSLYASGRTTGI 151
Score = 136 bits (329), Expect = 1e-32
Identities = 63/64 (98%), Positives = 64/64 (100%)
Frame = +1
Query: 61 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 240
+DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 241 RGIL 252
RGIL
Sbjct: 62 RGIL 65
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 182 bits (444), Expect = 1e-46
Identities = 82/85 (96%), Positives = 84/85 (98%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 67 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 435 FNSPAMYVAIQAVLSLYDSGRTTGM 509
FNSPAMYVAIQAVLSLY SGRTTG+
Sbjct: 127 FNSPAMYVAIQAVLSLYASGRTTGI 151
Score = 134 bits (325), Expect = 3e-32
Identities = 62/64 (96%), Positives = 64/64 (100%)
Frame = +1
Query: 61 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 240
+D+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 241 RGIL 252
RGIL
Sbjct: 62 RGIL 65
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 182 bits (444), Expect = 1e-46
Identities = 82/85 (96%), Positives = 84/85 (98%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 435 FNSPAMYVAIQAVLSLYDSGRTTGM 509
FNSPAMYVAIQAVLSLY SGRTTG+
Sbjct: 128 FNSPAMYVAIQAVLSLYASGRTTGI 152
Score = 143 bits (347), Expect = 7e-35
Identities = 66/66 (100%), Positives = 66/66 (100%)
Frame = +1
Query: 55 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 234
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 235 SKRGIL 252
SKRGIL
Sbjct: 61 SKRGIL 66
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 182 bits (444), Expect = 1e-46
Identities = 82/85 (96%), Positives = 84/85 (98%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 435 FNSPAMYVAIQAVLSLYDSGRTTGM 509
FNSPAMYVAIQAVLSLY SGRTTG+
Sbjct: 128 FNSPAMYVAIQAVLSLYASGRTTGI 152
Score = 139 bits (336), Expect = 2e-33
Identities = 63/66 (95%), Positives = 65/66 (98%)
Frame = +1
Query: 55 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 234
M DDD+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 235 SKRGIL 252
SKRGIL
Sbjct: 61 SKRGIL 66
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 137 bits (332), Expect = 5e-33
Identities = 63/64 (98%), Positives = 64/64 (100%)
Frame = +1
Query: 61 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 240
DDDVAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 241 RGIL 252
RGIL
Sbjct: 62 RGIL 65
Score = 63.3 bits (147), Expect = 1e-10
Identities = 30/37 (81%), Positives = 33/37 (89%)
Frame = +3
Query: 399 NREKMTQIMFETFNSPAMYVAIQAVLSLYDSGRTTGM 509
N + M +IMFETFNSPAMYVAIQAVLSLY SGRTTG+
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGI 114
Score = 50.4 bits (115), Expect = 9e-07
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTF 326
LKYPIEHGI+TNWDDMEKI TF
Sbjct: 67 LKYPIEHGIVTNWDDMEKIMFETF 90
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 101 bits (243), Expect = 3e-22
Identities = 46/67 (68%), Positives = 56/67 (83%)
Frame = +3
Query: 306 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 485
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 486 DSGRTTG 506
SGRTTG
Sbjct: 2189 ASGRTTG 2195
Score = 60.5 bits (140), Expect = 9e-10
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +1
Query: 22 ASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 180
AS T+ F+ V +V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2080 ASVTKQQAAFEQNGGTV--VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 99 bits (238), Expect = 1e-21
Identities = 45/93 (48%), Positives = 64/93 (68%), Gaps = 2/93 (2%)
Frame = +3
Query: 237 QERYP-HLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREK 410
Q RY + YP+++GI+ NWDDM+ +W +TF +++ + P VLLTE PLNP NREK
Sbjct: 63 QLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREK 122
Query: 411 MTQIMFETFNSPAMYVAIQAVLSLYDSGRTTGM 509
M ++MFE + +Y+AIQAVL+LY G TG+
Sbjct: 123 MIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGV 155
Score = 52.0 bits (119), Expect = 3e-07
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = +1
Query: 73 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 246
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 247 IL 252
+L
Sbjct: 67 ML 68
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 84.2 bits (199), Expect = 6e-17
Identities = 35/52 (67%), Positives = 46/52 (88%)
Frame = +3
Query: 354 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYDSGRTTGM 509
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLY +GRTTG+
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGV 177
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 72.1 bits (169), Expect = 3e-13
Identities = 30/82 (36%), Positives = 53/82 (64%)
Frame = +3
Query: 264 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 443
PI+ G+I +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 444 PAMYVAIQAVLSLYDSGRTTGM 509
PA ++ +VL+ + +GR+ G+
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGL 84
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/34 (76%), Positives = 28/34 (82%)
Frame = +1
Query: 79 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 180
LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = +3
Query: 420 IMFETFNSPAMYVAIQAVLSLYDSGRTTGM 509
IMFE FNSPA+YVAIQAVLSLY SGRTTG+
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGV 30
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 56.0 bits (129), Expect = 2e-08
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = +1
Query: 10 STIPASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 189
+ IP + + ++ FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ ++
Sbjct: 681 TVIPRTKKRRYS-FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSML 739
Query: 190 VG--MGQKD-SYVGDEAQSKRGIL 252
+G + KD GD A +K G++
Sbjct: 740 IGDNVNVKDYKKYGDAAVAKSGVM 763
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 50.8 bits (116), Expect = 7e-07
Identities = 21/39 (53%), Positives = 31/39 (79%)
Frame = -2
Query: 177 VARATHDGREDGAGRVVAGETGLAHAGAIVDYKRSNIVV 61
+AR+ DG E+G+G +V+GETGLAH GAI+D + +I+V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 45.6 bits (103), Expect = 3e-05
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +3
Query: 258 KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 371
K+PI H I+ +WD ME+ W + LR PE+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_25667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 35.1 bits (77), Expect = 0.038
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +2
Query: 86 STMAPACARPVSPATTRPAPSSRPSWVALATRA*WSVWARKTPTWVTRPRAREVSSPE 259
S P+ R TT+P P +PSWV + + W TW RP ++ P+
Sbjct: 36 SPSKPSDTRIADTTTTKPFPGYQPSWVKVK----YGAWYLNPKTWKARPDQEQLLDPK 89
>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 31.9 bits (69), Expect = 0.35
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 50 SRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 154
S C T+L+R T+ APA +P+SPAT P +R
Sbjct: 632 SSCLATLLVRPLETIPAPAPTKPISPATPASGPPTR 667
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.1 bits (67), Expect = 0.61
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANRE 407
L+ P + ++T+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 30.7 bits (66), Expect = 0.81
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 207 RLLRG*RGPEQERYPHLKY--PIEHGIITNWDDMEKIWHHTFYNE 335
+L G + E + Y L Y P + G + NWD ++IW +TF E
Sbjct: 271 KLFIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 70 VAALVVDNGSGMCKAGFAGDDAPRAV 147
+A LV+D G+ K GFA + APR++
Sbjct: 233 MATLVLDCGACSQKIGFASNQAPRSI 258
>SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6)
Length = 697
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 50 SRCATTMLLR-L*STMAPACARPVSPATTRPAPSSR 154
S C T+L+R L +T APA P SPAT P R
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPATPASGPPIR 56
>SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7)
Length = 682
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 41 TQSSRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 154
T S C T+L+R T+ APA P SPAT P R
Sbjct: 109 TSLSSCLATLLVRPLETIPAPAPTTPTSPATPASGPPIR 147
>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 89 TMAPACARPVS-PATTRPAPSSRPSWVALATRA*WSVWARKTPTWVTRPRAREVS-SPEV 262
T P P++ P+ RPAP W AT WS+ + ++P ++ VS +
Sbjct: 184 TSLPYTESPIAHPSLIRPAPIGIEIWYRYATWFLWSLRGYPVVSLASQPASQSVSRATPR 243
Query: 263 PHRA 274
PH A
Sbjct: 244 PHSA 247
>SB_35006| Best HMM Match : PT (HMM E-Value=3.4)
Length = 325
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -3
Query: 269 DGVLQVRIPLLLWASSPT*ESFWPIPTITPWWRGRPT 159
DGV+ +++ LLL +SSP S PI TP +G T
Sbjct: 274 DGVIDIKLNLLLLSSSPMFLSAVPIAPHTPTLQGLHT 310
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 28.7 bits (61), Expect = 3.3
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +2
Query: 35 KHTQSSRCATTMLLRL*STMAPACARPVSPATTRPAPSSRPSWVALATRA*WSVWARKTP 214
K T ++ ATT + +T PA P +P TT P ++ P+ T A TP
Sbjct: 63 KPTNTTPPATTTPTKPTTTTPPATTTPTTPTTTTPPATTTPTKPTTTTPP-----ATTTP 117
Query: 215 TWVTRPRAREVSSPEVP 265
T T ++P P
Sbjct: 118 TKPTTTTPPGTTTPTKP 134
Score = 27.5 bits (58), Expect = 7.6
Identities = 21/75 (28%), Positives = 30/75 (40%)
Frame = +2
Query: 41 TQSSRCATTMLLRL*STMAPACARPVSPATTRPAPSSRPSWVALATRA*WSVWARKTPTW 220
T ++ ATT + +T PA P P TT P ++ P+ T A TPT
Sbjct: 51 TTTTPPATTTPTKPTNTTPPATTTPTKPTTTTPPATTTPTTPTTTTPP-----ATTTPTK 105
Query: 221 VTRPRAREVSSPEVP 265
T ++P P
Sbjct: 106 PTTTTPPATTTPTKP 120
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 35 KHTQSSRCATTMLLRL*STMAPACARPVSPATTRPAPSSRPS 160
K T ++ ATT + +T PA P P TT P ++ P+
Sbjct: 133 KPTTTTPPATTTPTKPTTTTPPATTTPTKPTTTTPPATTTPT 174
>SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 50 SRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 154
S C T+L+R T+ APA P SPAT P R
Sbjct: 72 SSCLATLLVRPLETIPAPAPTTPTSPATPASGPPIR 107
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 182 PWWRGRPTMDGKTARGASSPAKPALHMPEP 93
P W + G T R PAKP+L++P P
Sbjct: 530 PKWLQQVKDGGNTNRRTRIPAKPSLNLPSP 559
>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3922
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 479 REHGLDRDVHGGGVEGLKHDLGHLLPVGLGVEGGFGEQHGV 357
REHG + G GVE + + P+ G G+G+QHG+
Sbjct: 3793 REHGGGKGGLGSGVEEVM--VAEEKPLLQGAMEGYGQQHGI 3831
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 50 SRCATTMLLR-L*STMAPACARPVSPAT 130
S C T+L+R L +T APA P SPAT
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPAT 48
>SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
Length = 1411
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 50 SRCATTMLLR-L*STMAPACARPVSPAT 130
S C T+L+R L +T APA P SPAT
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPAT 48
>SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 461
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 50 SRCATTMLLR-L*STMAPACARPVSPAT 130
S C T+L+R L +T APA P SPAT
Sbjct: 14 SSCLATLLVRPLETTPAPAPTTPTSPAT 41
>SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = -1
Query: 475 STAWIATYMAGELKVSNMIWV---IFSLLALGL 386
S AW+ + + EL+ S +WV IFS+L +G+
Sbjct: 163 SVAWLCSLLYLELEASLYVWVPSLIFSILIIGV 195
>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 52 KMCDDDVAALVVDNG-SGMCKAGFAGD 129
++CD D + +N MCKAG+ GD
Sbjct: 487 RLCDKDAVCRLENNAIKCMCKAGYTGD 513
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 176 WRGRPTMDGKTARGASSPAKPALHMPEP 93
W + G T R PAKPAL++P P
Sbjct: 72 WLQQVKDGGNTNRRTRIPAKPALNLPSP 99
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,650,512
Number of Sequences: 59808
Number of extensions: 406689
Number of successful extensions: 1408
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -