Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0093
(547 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 181 3e-46
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 181 3e-46
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 181 3e-46
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 181 3e-46
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 181 3e-46
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 181 3e-46
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 181 3e-46
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 181 3e-46
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 181 3e-46
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 181 3e-46
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 177 4e-45
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 143 6e-35
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 143 6e-35
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 142 2e-34
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 142 2e-34
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 128 3e-30
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 103 6e-23
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 97 1e-20
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 81 4e-16
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 37 0.011
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 37 0.011
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 31 0.41
U42841-9|AAM97955.1| 375|Caenorhabditis elegans Gex interacting... 30 1.2
U42841-5|AAM97959.1| 657|Caenorhabditis elegans Gex interacting... 30 1.2
U42841-4|AAK77640.1| 706|Caenorhabditis elegans Gex interacting... 30 1.2
U42841-3|AAK77638.1| 663|Caenorhabditis elegans Gex interacting... 30 1.2
U42841-2|AAK77639.1| 603|Caenorhabditis elegans Gex interacting... 30 1.2
U42841-1|AAM97958.1| 716|Caenorhabditis elegans Gex interacting... 30 1.2
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 30 1.2
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 1.7
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 5.0
AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 28 5.0
Z99277-6|CAB16484.1| 677|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 6.7
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 6.7
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 27 6.7
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 6.7
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 6.7
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 27 6.7
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 27 6.7
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 6.7
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 181 bits (441), Expect = 3e-46
Identities = 81/85 (95%), Positives = 84/85 (98%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 435 FNSPAMYVAIQAVLSLYDSGRTTGM 509
FN+PAMYVAIQAVLSLY SGRTTG+
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGV 152
Score = 142 bits (343), Expect = 2e-34
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +1
Query: 55 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 234
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 235 SKRGIL 252
SKRGIL
Sbjct: 61 SKRGIL 66
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 181 bits (441), Expect = 3e-46
Identities = 81/85 (95%), Positives = 84/85 (98%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 435 FNSPAMYVAIQAVLSLYDSGRTTGM 509
FN+PAMYVAIQAVLSLY SGRTTG+
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGI 152
Score = 143 bits (347), Expect = 6e-35
Identities = 66/66 (100%), Positives = 66/66 (100%)
Frame = +1
Query: 55 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 234
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 235 SKRGIL 252
SKRGIL
Sbjct: 61 SKRGIL 66
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 181 bits (441), Expect = 3e-46
Identities = 81/85 (95%), Positives = 84/85 (98%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 435 FNSPAMYVAIQAVLSLYDSGRTTGM 509
FN+PAMYVAIQAVLSLY SGRTTG+
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGV 152
Score = 142 bits (343), Expect = 2e-34
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +1
Query: 55 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 234
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 235 SKRGIL 252
SKRGIL
Sbjct: 61 SKRGIL 66
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 181 bits (441), Expect = 3e-46
Identities = 81/85 (95%), Positives = 84/85 (98%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 435 FNSPAMYVAIQAVLSLYDSGRTTGM 509
FN+PAMYVAIQAVLSLY SGRTTG+
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGV 152
Score = 142 bits (343), Expect = 2e-34
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +1
Query: 55 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 234
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 235 SKRGIL 252
SKRGIL
Sbjct: 61 SKRGIL 66
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 181 bits (441), Expect = 3e-46
Identities = 81/85 (95%), Positives = 84/85 (98%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 435 FNSPAMYVAIQAVLSLYDSGRTTGM 509
FN+PAMYVAIQAVLSLY SGRTTG+
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGV 152
Score = 142 bits (343), Expect = 2e-34
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +1
Query: 55 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 234
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 235 SKRGIL 252
SKRGIL
Sbjct: 61 SKRGIL 66
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 181 bits (441), Expect = 3e-46
Identities = 81/85 (95%), Positives = 84/85 (98%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 435 FNSPAMYVAIQAVLSLYDSGRTTGM 509
FN+PAMYVAIQAVLSLY SGRTTG+
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGI 152
Score = 142 bits (343), Expect = 2e-34
Identities = 64/66 (96%), Positives = 66/66 (100%)
Frame = +1
Query: 55 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 234
MCDDDVAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 235 SKRGIL 252
SKRGIL
Sbjct: 61 SKRGIL 66
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 181 bits (441), Expect = 3e-46
Identities = 81/85 (95%), Positives = 84/85 (98%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 435 FNSPAMYVAIQAVLSLYDSGRTTGM 509
FN+PAMYVAIQAVLSLY SGRTTG+
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGV 152
Score = 142 bits (343), Expect = 2e-34
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +1
Query: 55 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 234
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 235 SKRGIL 252
SKRGIL
Sbjct: 61 SKRGIL 66
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 181 bits (441), Expect = 3e-46
Identities = 81/85 (95%), Positives = 84/85 (98%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 24 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 83
Query: 435 FNSPAMYVAIQAVLSLYDSGRTTGM 509
FN+PAMYVAIQAVLSLY SGRTTG+
Sbjct: 84 FNTPAMYVAIQAVLSLYASGRTTGV 108
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = +1
Query: 187 MVGMGQKDSYVGDEAQSKRGIL 252
MVGMGQKDSYVGDEAQSKRGIL
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGIL 22
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 181 bits (441), Expect = 3e-46
Identities = 81/85 (95%), Positives = 84/85 (98%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 54 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 113
Query: 435 FNSPAMYVAIQAVLSLYDSGRTTGM 509
FN+PAMYVAIQAVLSLY SGRTTG+
Sbjct: 114 FNTPAMYVAIQAVLSLYASGRTTGV 138
Score = 103 bits (246), Expect = 1e-22
Identities = 47/48 (97%), Positives = 48/48 (100%)
Frame = +1
Query: 109 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 252
+AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 52
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 181 bits (441), Expect = 3e-46
Identities = 81/85 (95%), Positives = 84/85 (98%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 435 FNSPAMYVAIQAVLSLYDSGRTTGM 509
FN+PAMYVAIQAVLSLY SGRTTG+
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGV 152
Score = 142 bits (343), Expect = 2e-34
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +1
Query: 55 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 234
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 235 SKRGIL 252
SKRGIL
Sbjct: 61 SKRGIL 66
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 177 bits (431), Expect = 4e-45
Identities = 78/85 (91%), Positives = 83/85 (97%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGI+TNWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPK+NREKMTQIMFET
Sbjct: 67 LKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKSNREKMTQIMFET 126
Query: 435 FNSPAMYVAIQAVLSLYDSGRTTGM 509
FN+PAMYV IQAVLSLY SGRTTG+
Sbjct: 127 FNTPAMYVNIQAVLSLYASGRTTGI 151
Score = 132 bits (320), Expect = 1e-31
Identities = 60/64 (93%), Positives = 64/64 (100%)
Frame = +1
Query: 61 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 240
++++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 241 RGIL 252
RGIL
Sbjct: 62 RGIL 65
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 143 bits (347), Expect = 6e-35
Identities = 66/66 (100%), Positives = 66/66 (100%)
Frame = +1
Query: 55 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 234
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 235 SKRGIL 252
SKRGIL
Sbjct: 61 SKRGIL 66
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKI 311
LKYPIEHGI+TNWDDMEKI
Sbjct: 68 LKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 143 bits (347), Expect = 6e-35
Identities = 66/66 (100%), Positives = 66/66 (100%)
Frame = +1
Query: 55 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 234
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 235 SKRGIL 252
SKRGIL
Sbjct: 61 SKRGIL 66
Score = 41.1 bits (92), Expect = 5e-04
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDM 302
LKYPIEHGI+TNWDDM
Sbjct: 68 LKYPIEHGIVTNWDDM 83
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 142 bits (343), Expect = 2e-34
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +1
Query: 55 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 234
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 235 SKRGIL 252
SKRGIL
Sbjct: 61 SKRGIL 66
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKI 311
LKYPIEHGI+TNWDDMEKI
Sbjct: 68 LKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 142 bits (343), Expect = 2e-34
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +1
Query: 55 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 234
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 235 SKRGIL 252
SKRGIL
Sbjct: 61 SKRGIL 66
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKI 311
LKYPIEHGI+TNWDDMEKI
Sbjct: 68 LKYPIEHGIVTNWDDMEKI 86
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 128 bits (309), Expect = 3e-30
Identities = 54/86 (62%), Positives = 71/86 (82%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 431
++YP+EHGI+ NW DMEKIW + F ++L++ PEEHPVLLT+APLNP NRE+ +I FE
Sbjct: 70 IEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLKNRERSAEIFFE 129
Query: 432 TFNSPAMYVAIQAVLSLYDSGRTTGM 509
TFN PA+Y+ +QAVLSLY +GRTTG+
Sbjct: 130 TFNVPALYIQMQAVLSLYATGRTTGV 155
Score = 64.5 bits (150), Expect = 5e-11
Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Frame = +1
Query: 61 DDDVAA---LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 231
D DV A +V+DNGSG+ KAGFAG+ P+ F + VGRP++ VM G D ++G +A
Sbjct: 2 DYDVIANQPVVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKA 61
Query: 232 QSKRGI 249
+S RG+
Sbjct: 62 ESNRGL 67
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 103 bits (248), Expect = 6e-23
Identities = 46/86 (53%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 431
+ YP+++GI+ NWDDM +W HTF E L + P+E +LLTE PLNP +NREKM Q+MFE
Sbjct: 70 INYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNREKMFQVMFE 129
Query: 432 TFNSPAMYVAIQAVLSLYDSGRTTGM 509
+ ++YVA+QAVL+LY G TG+
Sbjct: 130 QYGFNSIYVAVQAVLTLYAQGLLTGV 155
Score = 49.6 bits (113), Expect = 1e-06
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +1
Query: 79 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGIL 252
+VVDNG+G K G+AG + P +FPS+VGRP R + + KD VG+E R +L
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 96.7 bits (230), Expect = 1e-20
Identities = 41/76 (53%), Positives = 53/76 (69%)
Frame = +3
Query: 255 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
+KYPI HGI+ +WD ME+ W + LR PE+H LLTE PLN NRE +IMFE+
Sbjct: 81 VKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAEIMFES 140
Query: 435 FNSPAMYVAIQAVLSL 482
FN P +Y+A+QAVL+L
Sbjct: 141 FNVPGLYIAVQAVLAL 156
Score = 35.5 bits (78), Expect = 0.025
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 55 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 162
M + A V+DNG+G K G+AG+ P+ + PS +
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAI 36
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 81.4 bits (192), Expect = 4e-16
Identities = 37/81 (45%), Positives = 53/81 (65%)
Frame = +3
Query: 267 IEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP 446
++ G+I +W+ EKI H++ N L P EHPVL +E+ N +A REK+T+IMFE F P
Sbjct: 94 MKEGLIEDWELFEKIVEHSYENILYSNPSEHPVLFSESSWNDRARREKLTEIMFEKFQVP 153
Query: 447 AMYVAIQAVLSLYDSGRTTGM 509
A Y++ VLS + GRT G+
Sbjct: 154 AYYLSKNVVLSCFAQGRTHGL 174
Score = 33.9 bits (74), Expect = 0.077
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 64 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 162
D+V+ LV D GS + GFAG++ P+ PS +
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYI 41
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 36.7 bits (81), Expect = 0.011
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +3
Query: 264 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 437
PIE G + NWD ++IW TF + V + LT+ A + ++I+F+ F
Sbjct: 62 PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYF 118
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 36.7 bits (81), Expect = 0.011
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +3
Query: 264 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 437
PIE G + NWD ++IW TF + V + LT+ A + ++I+F+ F
Sbjct: 62 PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYF 118
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 31.5 bits (68), Expect = 0.41
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 86 STMAPACARPVSPATTRPAPSSRP 157
+T AP PATTRPAP+S+P
Sbjct: 317 ATRAPPATTRAPPATTRPAPASQP 340
>U42841-9|AAM97955.1| 375|Caenorhabditis elegans Gex interacting
protein protein16, isoform g protein.
Length = 375
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -3
Query: 533 RHHLRSRAHTGGTTGVVQREHGLDRDVHGGG 441
RHH HTGG G R L R HGGG
Sbjct: 110 RHHSGWEGHTGGYQG--HRSSSLSRGGHGGG 138
>U42841-5|AAM97959.1| 657|Caenorhabditis elegans Gex interacting
protein protein16, isoform k protein.
Length = 657
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -3
Query: 533 RHHLRSRAHTGGTTGVVQREHGLDRDVHGGG 441
RHH HTGG G R L R HGGG
Sbjct: 392 RHHSGWEGHTGGYQG--HRSSSLSRGGHGGG 420
>U42841-4|AAK77640.1| 706|Caenorhabditis elegans Gex interacting
protein protein16, isoform c protein.
Length = 706
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -3
Query: 533 RHHLRSRAHTGGTTGVVQREHGLDRDVHGGG 441
RHH HTGG G R L R HGGG
Sbjct: 441 RHHSGWEGHTGGYQG--HRSSSLSRGGHGGG 469
>U42841-3|AAK77638.1| 663|Caenorhabditis elegans Gex interacting
protein protein16, isoform a protein.
Length = 663
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -3
Query: 533 RHHLRSRAHTGGTTGVVQREHGLDRDVHGGG 441
RHH HTGG G R L R HGGG
Sbjct: 398 RHHSGWEGHTGGYQG--HRSSSLSRGGHGGG 426
>U42841-2|AAK77639.1| 603|Caenorhabditis elegans Gex interacting
protein protein16, isoform b protein.
Length = 603
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -3
Query: 533 RHHLRSRAHTGGTTGVVQREHGLDRDVHGGG 441
RHH HTGG G R L R HGGG
Sbjct: 338 RHHSGWEGHTGGYQG--HRSSSLSRGGHGGG 366
>U42841-1|AAM97958.1| 716|Caenorhabditis elegans Gex interacting
protein protein16, isoform j protein.
Length = 716
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -3
Query: 533 RHHLRSRAHTGGTTGVVQREHGLDRDVHGGG 441
RHH HTGG G R L R HGGG
Sbjct: 451 RHHSGWEGHTGGYQG--HRSSSLSRGGHGGG 479
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = +2
Query: 77 RL*STMAPACARPVSPATTRPAPSSRPSWVALATRA 184
RL S +AP A P S A TR APS + VA RA
Sbjct: 231 RLSSAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRA 266
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 200 PIPTITPWWRGRPTMDGKTARGASSPAKPALHMPEPL 90
P T TP RGRP + ++ P P P+PL
Sbjct: 336 PPATQTPRSRGRPRIHSSASKKTEKPETPRAESPDPL 372
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 109 KAGFAGDDAPRAVFPSIVGRPRHQG 183
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical
protein F54A3.1 protein.
Length = 425
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +2
Query: 86 STMAPACARPVSPATTRPAPSSRPSWVALATRA 184
S +AP A P S A TR APS + VA RA
Sbjct: 238 SAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRA 270
>Z99277-6|CAB16484.1| 677|Caenorhabditis elegans Hypothetical
protein Y53C12A.1 protein.
Length = 677
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +2
Query: 116 VSPATTRPAPSSRPSWVALATRA*WSVWARKTPTWVTRPRAREVSSPEVPH 268
++P RPAP + TR+ WSV P VT + + SP+ H
Sbjct: 49 ITPRFRRPAPKMIKTMPP--TRSIWSVRKESVPLLVTPQGPKPLESPKYDH 97
>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical
protein C27H6.1 protein.
Length = 1657
Score = 27.5 bits (58), Expect = 6.7
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +2
Query: 200 ARKTPTWVTRPRAREVSSPEVPHRARYH 283
++K ++ +P E++SP+ PH+ +H
Sbjct: 286 SKKMLNFLAKPPTVEITSPDAPHQGAFH 313
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 250 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 167
GY GP P + GP P PG EG
Sbjct: 387 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 414
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 250 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 167
GY GP P + GP P PG EG
Sbjct: 386 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 413
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/60 (28%), Positives = 23/60 (38%)
Frame = +2
Query: 86 STMAPACARPVSPATTRPAPSSRPSWVALATRA*WSVWARKTPTWVTRPRAREVSSPEVP 265
ST +PA PV P P P P + + AR P RP+ + + E P
Sbjct: 958 STRSPALPPPVPPREAPPIPKRNPPPLGAPPKV--PEGARAPPPLPPRPKVKTTAVDETP 1015
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 250 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 167
GY GP P + GP P PG EG
Sbjct: 386 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 413
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 250 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 167
GY GP P + GP P PG EG
Sbjct: 387 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 414
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/60 (28%), Positives = 23/60 (38%)
Frame = +2
Query: 86 STMAPACARPVSPATTRPAPSSRPSWVALATRA*WSVWARKTPTWVTRPRAREVSSPEVP 265
ST +PA PV P P P P + + AR P RP+ + + E P
Sbjct: 958 STRSPALPPPVPPREAPPIPKRNPPPLGAPPKV--PEGARAPPPLPPRPKVKTTAVDETP 1015
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/60 (28%), Positives = 23/60 (38%)
Frame = +2
Query: 86 STMAPACARPVSPATTRPAPSSRPSWVALATRA*WSVWARKTPTWVTRPRAREVSSPEVP 265
ST +PA PV P P P P + + AR P RP+ + + E P
Sbjct: 958 STRSPALPPPVPPREAPPIPKRNPPPLGAPPKV--PEGARAPPPLPPRPKVKTTAVDETP 1015
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 250 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 167
GY GP P + GP P PG EG
Sbjct: 423 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 450
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,110,714
Number of Sequences: 27780
Number of extensions: 290890
Number of successful extensions: 1295
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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