Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0092
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    29   0.46 
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    27   3.2  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   4.2  

>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -2

Query: 390 LCINFVNSSRNISKLKLNYALLTVFMRKILVIPNDSAYIYIFLXI 256
           LC+ FV   +N+S +KL  A   V +R  L+ P   A +Y +L +
Sbjct: 322 LCLQFVGKFKNLSAVKLEDA--GVILRLSLMFPFVLAILYFYLQL 364


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = -3

Query: 257 LTLLMRKGHMSKSICEIEYYVGEMSLSGDNRS 162
           L  L++  ++ KS  E+ + +GE+S +GD+++
Sbjct: 336 LKQLIKDEYLQKSKLELSFILGELSKNGDDKN 367


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 209  FRKYFSTYGLFALKVSIXKNI*IYAESFGITSIFLIN 319
            F  ++ TY LF +K     NI  Y +     +IF++N
Sbjct: 1395 FLVFYVTYSLFGMKELNDNNIFAYGQLIFTAAIFIMN 1431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,588
Number of Sequences: 5004
Number of extensions: 54145
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)