Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0092
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338     30   1.4  
05_01_0213 - 1606383-1606816,1607695-1608355                           30   1.9  
10_08_0418 - 17779499-17780952,17781177-17782017                       29   4.4  

>06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338
          Length = 740

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 120 GTGWRGPSSAEHSATSVVTTERHFSNIIFYFANTFRHMA 236
           G  W+G S+   +   V+   R +  +IF+++N+F  MA
Sbjct: 610 GGVWQGNSNGHAAGDPVMHDNRRYRYLIFFYSNSFSFMA 648


>05_01_0213 - 1606383-1606816,1607695-1608355
          Length = 364

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 181 SVVTTEVAECSADE-GPRQPVPLSEDVLSLVNVQQGQIFRQP 59
           +  TT  + CS++E GP  P P SE++    N Q  +   QP
Sbjct: 197 TTTTTTTSSCSSEEVGPSSPSPTSEEIRLANNQQSSRRKLQP 238


>10_08_0418 - 17779499-17780952,17781177-17782017
          Length = 764

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 81  CCTFTRESTSSERGTGWRGPSSAEHSATSVVTTERHFSNIIFYF 212
           C  F  ++ +  R T  + P+ A+H+   +VT    F N +FYF
Sbjct: 203 CEVFVLDAPAYWRPTAQQPPAPADHNVKVMVTDPPVFLNGLFYF 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,232,959
Number of Sequences: 37544
Number of extensions: 306096
Number of successful extensions: 682
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)