Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0092
         (667 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24780.1 68418.m02926 vegetative storage protein 1 (VSP1) ide...    27   8.5  
At5g24770.1 68418.m02924 vegetative storage protein 2 (VSP2) ide...    27   8.5  

>At5g24780.1 68418.m02926 vegetative storage protein 1 (VSP1)
           identical to SP|O49195 Vegetative storage protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF03767: HAD superfamily (subfamily IIIB) phosphatase
          Length = 270

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 318 FMRKILVIPNDSAYIYIFLXIDTFNAKRPYVEKY 217
           F  K L + ND+  ++IF   DT  +  PY  KY
Sbjct: 106 FYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKY 139


>At5g24770.1 68418.m02924 vegetative storage protein 2 (VSP2)
           identical to SP|O82122 Vegetative storage protein 2
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF03767: HAD superfamily (subfamily IIIB) phosphatase
          Length = 265

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 318 FMRKILVIPNDSAYIYIFLXIDTFNAKRPYVEKY 217
           F  K L + ND+  ++IF   DT  +  PY  KY
Sbjct: 101 FYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKY 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,589,302
Number of Sequences: 28952
Number of extensions: 263542
Number of successful extensions: 588
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)