Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0088
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    25   2.2  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   2.2  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    24   6.8  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    24   6.8  
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p...    23   9.0  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    23   9.0  

>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 202 P*RVGRAPRRAQKGLGVNALSLRRCR 279
           P RV +A R A  G+G  AL +RR R
Sbjct: 122 PSRVRQADRFAAPGIGAGALPIRRKR 147


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 268 GGSKRSRPDPSALSV 224
           GG +R +PDPS+L++
Sbjct: 953 GGGERDKPDPSSLTI 967


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 219 CATESAEGSGRERFEPPSVQILVVVAILQ 305
           CAT  A   G++RF P S +++ ++  +Q
Sbjct: 564 CATLIALAVGKQRFLPVSQELIQILGNIQ 592


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 68  IR*GVCNDSPAEATSPENGWR*SVLPIHYRYR 163
           ++  +  +SP EAT PE  W   ++  H   R
Sbjct: 2   VKTNISKNSPKEATVPELDWPFKLIKSHLETR 33


>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 81  CATTHLPKQPALKMDGAEAFCLYTTVTGT 167
           C T  +  Q  + M G E  CLY    GT
Sbjct: 159 CHTLAVTCQLPIDMGGGEGKCLYIDTEGT 187


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 263 ASVGADLGGSSNTPA 307
           ASVG+D GGS   PA
Sbjct: 156 ASVGSDTGGSIRLPA 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,479,003
Number of Sequences: 5004
Number of extensions: 27549
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)