Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0088
         (330 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0471 - 18121023-18121213,18121954-18122080,18122221-181222...    31   0.17 
08_01_0759 - 7199085-7199414                                           27   3.6  
08_01_0755 - 7159471-7160124                                           27   3.6  
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    27   4.7  
07_03_0952 + 22856077-22856185,22856639-22856817                       26   8.3  
07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561     26   8.3  
07_01_0373 + 2783596-2784933                                           26   8.3  
01_01_0512 + 3735005-3735580                                           26   8.3  

>11_04_0471 -
           18121023-18121213,18121954-18122080,18122221-18122253,
           18122969-18123009,18123415-18123484,18123626-18123744,
           18123876-18123942,18124735-18124809,18125023-18125050,
           18125130-18125179,18125679-18125741,18125829-18125870,
           18126000-18126078,18127233-18127368,18128013-18128517,
           18129238-18129372
          Length = 586

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = +3

Query: 42  AGRWPWK-SESGKECATTHLPKQPALKMDGAEAFCLYTTVTGTCDAKFLIWYH*AVTSR- 215
           AGRW  + SE G E A   LPK  A  + GA +      ++   D  FL+    A+    
Sbjct: 159 AGRWSSRRSEDGSEEAAAVLPKPLAAIVTGARSRSNSPAISNVNDDSFLLLVQ-AIGRNG 217

Query: 216 --TCATESAEGSGRERFEPP 269
             T A      +GR  F PP
Sbjct: 218 VDTGAANRPPSTGRSTFAPP 237


>08_01_0759 - 7199085-7199414
          Length = 109

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 300 VLLLPPRSAPTEAQSVHAQTLLRS 229
           V++LPP +AP EA S  A   +RS
Sbjct: 30  VVVLPPAAAPGEAPSADAAAFVRS 53


>08_01_0755 - 7159471-7160124
          Length = 217

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 300 VLLLPPRSAPTEAQSVHAQTLLRS 229
           V++LPP +AP EA S  A   +RS
Sbjct: 30  VVVLPPAAAPGEAPSADAAAFVRS 53


>06_03_0099 +
           16633928-16638213,16638299-16638386,16638823-16638950,
           16640008-16640278
          Length = 1590

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -2

Query: 113 GWLLRQVSRCTLLTGFRL---PWPPSCCHER 30
           G+LLR  +   LL+  RL   P PP CCH R
Sbjct: 63  GYLLRHSAHFLLLSA-RLRPPPPPPRCCHRR 92


>07_03_0952 + 22856077-22856185,22856639-22856817
          Length = 95

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 176 SITRAGNGSV*AKRFSAIHFQGWLLRQVSRC 84
           S  R+G       R+S +  QGWLLR    C
Sbjct: 30  SPARSGRAGFLGVRWSLVELQGWLLRWSWSC 60


>07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561
          Length = 62

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 19  KGVGRS*QQDGGHGSRNPVRSVQRLTCRS 105
           +GVG+  Q  GG G++   + V +L C+S
Sbjct: 5   EGVGQGHQSRGGGGAKTTKKIVLKLQCQS 33


>07_01_0373 + 2783596-2784933
          Length = 445

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 185 NLVSLSRNE*DVRHGERRRVWA*TL*ASVGADLGGSSNTPAKP 313
           +++SLSR+E  V+  ER R  +    A+   D G  + TP  P
Sbjct: 171 SVLSLSRSESRVKARERARERSSAAAAAASKDAGDDAATPTAP 213


>01_01_0512 + 3735005-3735580
          Length = 191

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -1

Query: 306 AGVLLLPPRSAPTEAQS----VHAQTLLRSPWRTSYSLRL 199
           AG LL P  +A   A++    V  +T   SPWRTS ++ L
Sbjct: 46  AGTLLQPALAADLAARTCWYTVQIKTSCASPWRTSDAVSL 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,156,822
Number of Sequences: 37544
Number of extensions: 234486
Number of successful extensions: 665
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)