Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0088
         (330 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    28   1.8  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    28   1.8  
Z81029-5|CAB02701.1|  219|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    26   5.5  
AF039047-7|AAK95883.1|  187|Caenorhabditis elegans Hypothetical ...    26   5.5  
AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophi...    26   5.5  
U23511-1|AAC46791.1|  859|Caenorhabditis elegans Hypothetical pr...    26   7.3  
U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbona...    25   9.7  
AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion transpo...    25   9.7  
AF039049-4|AAB94250.2|  293|Caenorhabditis elegans Serpentine re...    25   9.7  

>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 7   WDTMKGVGRS*QQDGGHGSRNPVRSVQRLTCRSNQP*K 120
           W T+  V +S Q+ G   +R PVR + R     + P K
Sbjct: 9   WKTLTSVSKSGQKKGRRNTRQPVRPLNRFYRIGSSPMK 46


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 7   WDTMKGVGRS*QQDGGHGSRNPVRSVQRLTCRSNQP*K 120
           W T+  V +S Q+ G   +R PVR + R     + P K
Sbjct: 9   WKTLTSVSKSGQKKGRRNTRQPVRPLNRFYRIGSSPMK 46


>Z81029-5|CAB02701.1|  219|Caenorhabditis elegans Hypothetical
           protein C01A2.6 protein.
          Length = 219

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 273 PTEAQSVHAQTLLRSPWRTSYSLRLNDTK 187
           P++AQ + A      PW+++YS RL D K
Sbjct: 79  PSKAQILEAWENGAEPWQSTYSERLEDEK 107


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
           protein F47C12.1 protein.
          Length = 1827

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 45  GRWPWKSESGKECATTHLPKQPALKMDGAEAFCLYTTVTGTCDAKFLI 188
           G W  K  +  + A THLP+    K++  + F         C++ F I
Sbjct: 393 GTWSSKQPNCTKVACTHLPEVANAKIEVPDRFLFGDVARVVCNSGFTI 440


>AF039047-7|AAK95883.1|  187|Caenorhabditis elegans Hypothetical
           protein K11D12.7 protein.
          Length = 187

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 63  SESGKECATTHLPKQPALKMDGAEAFCLYTTVTGTC 170
           S +GK    +H      LK DG   FCL    TG C
Sbjct: 91  SVAGKN-GKSHCGGMEQLKCDGPNTFCLNGPFTGIC 125


>AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform a
           protein.
          Length = 378

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 19  KGVGRS*QQDGGHGSRN 69
           +G GR  Q+ GGHG RN
Sbjct: 345 RGGGRGGQRQGGHGGRN 361


>U23511-1|AAC46791.1|  859|Caenorhabditis elegans Hypothetical
           protein C32D5.3 protein.
          Length = 859

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -2

Query: 320 SSRASLEYCYYHQDLHRRRLKAFTPRPFCALRGARPTRYGLMIPN*KFSI 171
           S RA +E    H DLH+R    +TP P  A+   R   Y +   N  F I
Sbjct: 262 SLRAVIEPVLKHMDLHKR----WTPPPSFAIHVFRAIIYSIQSQNSYFVI 307


>U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform a protein.
          Length = 959

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 222 ATESAEGSGRERFEPPSVQILVVVAILQRSPGRLTL 329
           ATE+A  S  ER  P   ++  V  +  R+PG + L
Sbjct: 52  ATETASESSLEREVPSRSRVFTVKPVGTRTPGGIVL 87


>AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion
           transporter ABTS-3 protein.
          Length = 959

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 222 ATESAEGSGRERFEPPSVQILVVVAILQRSPGRLTL 329
           ATE+A  S  ER  P   ++  V  +  R+PG + L
Sbjct: 52  ATETASESSLEREVPSRSRVFTVKPVGTRTPGGIVL 87


>AF039049-4|AAB94250.2|  293|Caenorhabditis elegans Serpentine
           receptor, class x protein65 protein.
          Length = 293

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 296 CYYHQDLHRRRLKAFTPRPFCALRG 222
           CY++ D   R L  FT  PFCA+ G
Sbjct: 143 CYFYFDEEIRFL-TFTKTPFCAIIG 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,454,668
Number of Sequences: 27780
Number of extensions: 162634
Number of successful extensions: 341
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)