Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0088
         (330 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.18 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.41 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   0.41 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   2.9  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     20   6.7  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    20   8.9  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.4 bits (53), Expect = 0.18
 Identities = 14/68 (20%), Positives = 34/68 (50%)
 Frame = -3

Query: 319 LPGLRWSIATTTKICTDGGSKRSRPDPSALSVAHVLLVTA**YQIKNLASHVPVTVVYRQ 140
           +P +   + T T +  D  S       S   + H+L ++   +Q+ + +++ P  ++Y +
Sbjct: 261 IPAVTMMLLTLTVLWLDSRSTERMIAASVNLICHILCMSDLHWQLPHNSTNPPNILLYYR 320

Query: 139 NASAPSIF 116
           ++ A S+F
Sbjct: 321 DSLALSVF 328


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.41
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -1

Query: 303 GVLLLPPRSAPTEAQSVHAQT---LLRSPWRTSYSLRLN 196
           G L+ PP  A    Q VHAQ    L RSP  + +S  +N
Sbjct: 58  GNLVFPPFRAEDYRQEVHAQVYSCLARSPAGSVHSRDVN 96



 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 255 RFEPPSVQILVVVAILQRSP 314
           RFEPP ++       LQ  P
Sbjct: 390 RFEPPQIRQAFAEETLQPGP 409



 Score = 19.8 bits (39), Expect = 8.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 138 TLQRHPFSGLVASAGESLHTPYRIPT 61
           T+Q+  F+ L  +AGE  +    +PT
Sbjct: 584 TIQQFSFTKLPMNAGEFANLQCIVPT 609


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 0.41
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 83  CNDSPAEATSPENGW 127
           C D P E   PE+GW
Sbjct: 642 CRDIPEEFLRPESGW 656


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 142 AYTLPLPARVMLNF 183
           ++ +PLP RV+ NF
Sbjct: 222 SFCIPLPVRVLPNF 235


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 270 TEAQSVHAQTLLRSPWRTSYSLRLNDTKLKI 178
           TEA  V  +  L   W+ + +LR + TK  I
Sbjct: 79  TEAFEVDLEFYLGKEWKKNLNLRDSVTKYLI 109


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 284 GGSSNTPAKP 313
           GG S TPA P
Sbjct: 20  GGGSTTPASP 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,811
Number of Sequences: 438
Number of extensions: 2149
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)