Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0088
         (330 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    32   0.11 
At5g35830.1 68418.m04305 ankyrin repeat family protein contains ...    26   5.3  
At2g35890.1 68415.m04406 calcium-dependent protein kinase, putat...    26   5.3  
At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel...    26   7.0  
At5g48140.1 68418.m05946 polygalacturonase, putative / pectinase...    25   9.3  
At4g21990.1 68417.m03183 5'-adenylylsulfate reductase (APR3) / P...    25   9.3  
At4g04610.1 68417.m00674 5'-adenylylsulfate reductase (APR1) / P...    25   9.3  
At1g75280.1 68414.m08745 isoflavone reductase, putative identica...    25   9.3  
At1g62180.1 68414.m07014 5'-adenylylsulfate reductase 2, chlorop...    25   9.3  
At1g20490.1 68414.m02553 AMP-dependent synthetase and ligase fam...    25   9.3  

>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 156  VTGTCDAKFLIW-YH*AVTSRTCATESAEGSG 248
            VTG+ D+  L+W  H A TSRT  +E + GSG
Sbjct: 2684 VTGSRDSTVLLWRIHKAFTSRTSVSEPSTGSG 2715


>At5g35830.1 68418.m04305 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 282

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = +3

Query: 66  ESGKECATTHLPK---QPALKMDGAEAFC 143
           E GKE +T+ L K   + +L +DG++AFC
Sbjct: 251 ERGKEKSTSPLDKYKQRDSLALDGSQAFC 279


>At2g35890.1 68415.m04406 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase, isoform AK1 (CDPK). [Arabidopsis thaliana]
           SWISS-PROT:Q06850; contains protein kinase domain,
           Pfam:PF00069; contains EF hand domain (calcium-binding
           EF-hand), Pfam:PF00036, INTERPRO:IPR002048
          Length = 520

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 36  MTAGRWPWKSESGKECATTHLPKQPALKMDGAEAFC 143
           +T+  WP  SES K+     L + P  ++   +  C
Sbjct: 351 LTSDPWPQVSESAKDLIRKMLERNPIQRLTAQQVLC 386


>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
           putative (CNGC16) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 705

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
 Frame = +3

Query: 57  WKSESGKECATTHLPKQPALKMD-------GAEAFCLYTTVTGTCDAK 179
           W+ E  KE   TH P    L +D       G +A+   T V   CDA+
Sbjct: 250 WRRECIKEMNATHSPSCSLLFLDCGSLHDPGRQAWMRITRVLSNCDAR 297


>At5g48140.1 68418.m05946 polygalacturonase, putative / pectinase,
           putative strong similarity to polygalacturonase PGA3
           [Arabidopsis thaliana] GI:3152948; contains PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 395

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 131 SAIHFQGWLLRQVSRCTLLTGFRLPWPPSCCHERPTPFMVSH 6
           S IHF+  LL+ VS   L+     PW   C  ++P+   +++
Sbjct: 281 SDIHFENILLKNVSNPILIDQEYCPW-NQCNKQKPSTIKLAN 321


>At4g21990.1 68417.m03183 5'-adenylylsulfate reductase (APR3) / PAPS
           reductase homolog (PRH26) identical to
           5'-adenylylsulfate reductase [Arabidopsis thaliana]
           GI:2738760; identical to cDNA PAPS reductase homolog
           (PRH26) GI:1710113
          Length = 458

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 3   LMGHHERRWSLMTAGRWPWKSESGKEC 83
           L G HER       GRW W+    KEC
Sbjct: 294 LPGQHERE------GRWWWEDAKAKEC 314


>At4g04610.1 68417.m00674 5'-adenylylsulfate reductase (APR1) / PAPS
           reductase homolog (PRH19) identical to
           5'-adenylylsulfate reductase [Arabidopsis thaliana]
           GI:2738756; identical to cDNA PAPS reductase homolog
           (PRH19) GI:1710111
          Length = 465

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 3   LMGHHERRWSLMTAGRWPWKSESGKEC 83
           L G HER       GRW W+    KEC
Sbjct: 302 LPGQHERE------GRWWWEDAKAKEC 322


>At1g75280.1 68414.m08745 isoflavone reductase, putative identical
           to SP|P52577 Isoflavone reductase homolog P3 (EC
           1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile
           PF02716: isoflavone reductase
          Length = 310

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 57  WKSESGKECATTHLPKQPALK 119
           W+ + GK    THLP++  LK
Sbjct: 233 WEKKIGKSLEKTHLPEEQLLK 253


>At1g62180.1 68414.m07014 5'-adenylylsulfate reductase 2,
           chloroplast (APR2) (APSR) / adenosine 5'-phosphosulfate
           5'-adenylylsulfate (APS) sulfotransferase 2 /
           3'-phosphoadenosine-5'-phosphosulfate (PAPS) reductase
           homolog 43 (PRH-43) identical to SP|P92981
           5'-adenylylsulfate reductase 2, chloroplast precursor
           (EC 1.8.4.9) (Adenosine 5'-phosphosulfate
           5'-adenylylsulfate sulfotransferase 2) (APS
           sulfotransferase 2) (Thioredoxin independent APS
           reductase 2) (3'-phosphoadenosine-5'-phosphosulfate
           reductase homolog 43) (PAPS reductase homolog 43)
           (Prh-43) {Arabidopsis thaliana}; identical to cDNA PAPS
           reductase homolog (PRH43) GI:1710115
          Length = 454

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 3   LMGHHERRWSLMTAGRWPWKSESGKEC 83
           L G HER       GRW W+    KEC
Sbjct: 294 LPGQHERE------GRWWWEDAKAKEC 314


>At1g20490.1 68414.m02553 AMP-dependent synthetase and ligase family
           protein similar to SP|Q42524 and SP|Q9S725; contains
           Pfam AMP-binding enzyme domain PF00501
          Length = 447

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 125 IHFQGWLLRQVSRCTLLTGFRLPW 54
           I+ +GWL  ++S  ++  GF L W
Sbjct: 422 INLEGWLKLEISAISMKMGFYLLW 445


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,219,718
Number of Sequences: 28952
Number of extensions: 161767
Number of successful extensions: 394
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)