Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0084
         (757 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)                    31   1.3  
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)                     29   4.1  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)               28   9.4  
SB_21237| Best HMM Match : HATPase_c (HMM E-Value=1.9e-12)             28   9.4  

>SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)
          Length = 379

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 166 HREACPDVTHDTTARPYWS-IPTKEIPASLSRR 71
           HRE  PD+THD+   P+   +P   + AS+ RR
Sbjct: 268 HREHVPDLTHDSWTVPFTGVVPFTALSASVRRR 300


>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
          Length = 458

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 324 RSK*RRNVLKT*RRESGYDPRSPHLSHFDKTDPTQARLSEWSA 196
           R + R+   K  R+ + ++P    L H  + DP Q+ +S WS+
Sbjct: 50  RKENRKKNTKLMRKRTRWNPSHLSLFHLSEPDPYQSAISTWSS 92


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -3

Query: 467 PFKIQQILNGTEHCNEPDRAFQKIGLHKGPLRRFTGNATAQVTYPYRLDQSEGET 303
           P    ++LN  +  ++  R   K+   +GP  R    +T + TY   L  SE +T
Sbjct: 12  PVSTSKLLNSEQRGSQNGRPSPKVDSPQGPKTRGLARSTPRKTYFEGLPSSESDT 66


>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
          Length = 3561

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 156  HVLMSHTTLLRDLIGRFPLKKFL 88
            HV   H TLL D  GR PL KF+
Sbjct: 1856 HVFHDHRTLLIDNDGRKPLNKFI 1878


>SB_21237| Best HMM Match : HATPase_c (HMM E-Value=1.9e-12)
          Length = 328

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +3

Query: 357 IASESS*WPFMKSDFLKCTIRFIAVFGSIQYLLYFKRHF*HNRVFLILAVQLIATNS 527
           +ASE+    F ++ F+  +I F+ +FG+  Y  Y K+    N++  +    L A N+
Sbjct: 56  LASENKIKIFQRNGFIASSILFLLLFGTAFYFYYQKKR--TNKIIEVQKENLDALNA 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,121,016
Number of Sequences: 59808
Number of extensions: 473412
Number of successful extensions: 1066
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)