Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0084
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22350.1 68418.m02607 expressed protein                             31   1.1  
At2g01720.1 68415.m00100 ribophorin I family protein similar to ...    29   4.4  
At4g01910.1 68417.m00251 DC1 domain-containing protein contains ...    28   7.7  
At1g20530.1 68414.m02558 hypothetical protein                          28   7.7  

>At5g22350.1 68418.m02607 expressed protein
          Length = 427

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -3

Query: 440 GTEHCNEPDRAFQKIGLHKGPLRRFTG--NATAQVTYPYRLDQSEGETYLRLE 288
           G +HC      FQK    +G +R FTG  + +   +YP   D +E  T +R E
Sbjct: 365 GADHCKWKIAEFQKSLRERGVVRSFTGFEDMSESWSYPPLNDTAEAATRIRRE 417


>At2g01720.1 68415.m00100 ribophorin I family protein similar to
           SP|P04843 Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase 67 kDa subunit precursor (EC
           2.4.1.119) (Ribophorin I) {Homo sapiens}; contains Pfam
           profile PF04597: Ribophorin I
          Length = 464

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 168 DIAKHVLMSHTTLLRDLIGRFPLKKFLLLYPEEEYSNI 55
           D++ H++ +  TL  + IG+ P  + LL +P  +  N+
Sbjct: 37  DLSSHIVKAFLTLKVENIGKDPAAEMLLAFPPTQIKNL 74


>At4g01910.1 68417.m00251 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 269 SYPDSLLQVLSTFRLHFDLIGMDT*LVLWHCQ 364
           S+P+  L++ S  R H DL G  T  + ++C+
Sbjct: 64  SHPNHTLELCSNLRFHCDLCGRRTNYLSYYCE 95


>At1g20530.1 68414.m02558 hypothetical protein
          Length = 614

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -2

Query: 306 NVLKT*RRESGYDPRSPHLSHFDKTDPTQARLSEWSAWAYRVVQHADIAKHVLMSHTTLL 127
           N+L T +  + +DP+    S+F+    T  +L  W    Y+ V+  +  +   M +  LL
Sbjct: 284 NILYTKKVMTPFDPKPVEESNFNNLSSTLKKLFMWEKKLYQEVKAEEKLRTSHMKNYKLL 343

Query: 126 RDL 118
           R L
Sbjct: 344 RRL 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,830,101
Number of Sequences: 28952
Number of extensions: 321500
Number of successful extensions: 717
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)