Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0082
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   3.2  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   4.3  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   5.6  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    24   7.4  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    24   7.4  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    24   9.8  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    24   9.8  

>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 18/73 (24%), Positives = 30/73 (41%)
 Frame = -2

Query: 237 AEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSXFFLTRA 58
           + +++   GK+   V P  +      DF + +S S+    ++S  G  R           
Sbjct: 306 SSSTVERKGKEASEVNPNSTSSVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPC 358

Query: 57  GRLRRSGDNSXRC 19
           GR R +G NS  C
Sbjct: 359 GRCRDAGLNSEDC 371


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 308 PNVRNCGSSRTEQYYYRNDKPSVG 379
           P V N GSSRT+ +Y R    + G
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAG 109


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 56  PARVKKNXDSIDLRDPNGLRRRVSRFECETRLV 154
           P  ++   DS+ L   NGL +R  R   ET+ +
Sbjct: 337 PCSIQLFFDSVPLEKINGLEQRALRLLAETKQI 369


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 276 EATIRGISLNASKAEASLAESGKDMLTVEPRESGGSKQ 163
           EA     +  A +AEA   E+ K+++  EP+++  +K+
Sbjct: 93  EAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 92  LRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDS 220
           L  P+G R  VS    + +++K+ C   P SRG TV    PD+
Sbjct: 6   LSSPSGAR--VSSVTVKNKVLKTPCFFLPTSRG-TVPHLTPDN 45


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = -2

Query: 159 DFTSR-----VSHSKRETRRRSPFGSRRSMLSXFFLTRAGRLRRSG 37
           DF+SR         + + RRR P  SRR +       RA ++R SG
Sbjct: 5   DFSSRSLFLEAKEEEYKQRRRVPLDSRRRVRRACLSCRAKKIRCSG 50


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = -2

Query: 276 EATIRGISLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 97
           E ++ G +L+++  + + +         +PRE    ++  F    +HS R  +   PF S
Sbjct: 35  EESLGGHTLSSNAFKNNSSSISPSSSAKDPREQ---RKRTFPLNDTHSSRARQHERPFRS 91

Query: 96  RRS 88
           R+S
Sbjct: 92  RKS 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,526,490
Number of Sequences: 5004
Number of extensions: 27392
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)