Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0082
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.44
02_04_0276 + 21491150-21492761,21492891-21492947,21493817-214938... 30 0.59
07_03_0846 - 21983581-21986055 29 1.0
12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718 29 1.4
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 29 1.4
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 3.1
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 27 4.1
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 4.1
01_06_1777 + 39818212-39819696 27 4.1
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 27 5.5
01_05_0118 + 18335065-18335553 27 5.5
06_01_1170 - 10002650-10004122 27 7.2
06_01_0655 + 4742267-4742531,4743313-4744136 27 7.2
02_02_0156 - 7277793-7277875,7278535-7278638,7278808-7279211,727... 27 7.2
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816... 26 9.6
03_06_0727 - 35766252-35766481,35766592-35766721,35767049-357671... 26 9.6
03_06_0253 - 32666152-32666360,32666443-32666632,32666764-326668... 26 9.6
03_05_0751 - 27389910-27392105 26 9.6
02_05_0814 - 31970558-31971126,31971242-31971413 26 9.6
02_02_0240 + 8196140-8198248,8198381-8198650 26 9.6
01_01_0785 - 6076089-6077615 26 9.6
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 0.44
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -2
Query: 231 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 97
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>02_04_0276 +
21491150-21492761,21492891-21492947,21493817-21493870,
21493994-21494022
Length = 583
Score = 30.3 bits (65), Expect = 0.59
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = -2
Query: 318 RTFGSCTRPSGRWCEATIRGISLNASKAEAS--LAESGKDMLTVEPRESG--GSKQCDFT 151
R GS RP C A I+ +S + AEA LA G D++ +G G+ Q D
Sbjct: 86 RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAA 145
Query: 150 SRV 142
R+
Sbjct: 146 RRL 148
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 1.0
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 89 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 238
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718
Length = 490
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 15 PDIXLSYPRTFGAVLHVLRKTPIASISAIQMGF 113
P L YP TF ++ ++ +TP+ I++I+ GF
Sbjct: 142 PLFYLQYPNTFESLRYICFETPLDYIASIKNGF 174
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 29.1 bits (62), Expect = 1.4
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +2
Query: 17 RHRXELS-PDLRSRPARVKKNXDSIDLR-DPNG-LRRRVSRFECETRLVKSHCLEPPDSR 187
R R E+ DLR R R + N S+ + + NG RRR R+ +SH SR
Sbjct: 383 RDRVEMDGSDLRHRLRRRRINESSLAISPERNGEQRRRDERYRERAHGHRSHRDHHQSSR 442
Query: 188 GSTVSISLPDSARL 229
GST+S L +L
Sbjct: 443 GSTLSSRLQGRIKL 456
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 3.1
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -2
Query: 240 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSXFFL 67
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 66 TRAGR 52
TRA R
Sbjct: 64 TRAAR 68
>10_06_0105 -
10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 254 LIPRMVASHHRPLGRVHEPNVRNCGSSRT 340
L+P A+H LGR H+ N + GS+ T
Sbjct: 535 LVPPTNAAHQPSLGRDHDSNKKTSGSAGT 563
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 212 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 108
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>01_06_1777 + 39818212-39819696
Length = 494
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 182 SRGSTVSISLPDSARLASALEAFRLIPRMVASHHRP-LGRVHEPNVRNCGSSRT 340
+R T SI + + ++A +++ RMV HHRP G + C + RT
Sbjct: 399 TRKETFSILISGLCSESRFIDAAQIMERMVKGHHRPEAGEFNNVIEGLCSAGRT 452
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 180 SGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 82
S G+ Q T R HS E RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>01_05_0118 + 18335065-18335553
Length = 162
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 222 AESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSR 94
A+ G + V P +GG+++ + ++ K T RR+ FG+R
Sbjct: 18 AQDGHRLPDVAPA-AGGTREPEHARLIARRKESTYRRTAFGNR 59
>06_01_1170 - 10002650-10004122
Length = 490
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 182 SRGSTVSISLPDSARLASALEAFRLIPRMVASHHRPL 292
S GS + P +A LA+ALE R+ A H PL
Sbjct: 298 SFGSMAQLQPPHAAALAAALERTRVAFVWAAGSHTPL 334
>06_01_0655 + 4742267-4742531,4743313-4744136
Length = 362
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 89 DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLAS 235
++RDP G+R + F +++ E RG ++ PD A +AS
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVAS 178
>02_02_0156 -
7277793-7277875,7278535-7278638,7278808-7279211,
7279403-7279543,7279700-7279904,7279984-7280093
Length = 348
Score = 26.6 bits (56), Expect = 7.2
Identities = 22/49 (44%), Positives = 25/49 (51%)
Frame = -3
Query: 353 SNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLA*TPLRPKPA*PNPAR 207
SNTA ER L A+ R LP AG + + LRPKP P PAR
Sbjct: 279 SNTAAKER------LTRAVNRVQK-LTLPKAGQS-SSLRPKPRDPAPAR 319
>04_03_0092 +
11079185-11079589,11081319-11081409,11081507-11081612,
11081694-11081976,11082062-11082210,11083582-11083735,
11083837-11084793
Length = 714
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 335 ERNRSFGHLVHALGRAAGGAKLPSAGL 255
ERN FG HA+G + G L S GL
Sbjct: 453 ERNIRFGVREHAMGAISNGIALHSPGL 479
>03_06_0727 -
35766252-35766481,35766592-35766721,35767049-35767116,
35767179-35767217,35767677-35767761,35768097-35768197,
35768292-35768511
Length = 290
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 356 DSNTAQYERNRSFGHLVHALGRAAGGAKLPS 264
D+N A+ ++ +SF HLV R + +K P+
Sbjct: 164 DTNKAEEQQLKSFAHLVFPNSRKSASSKEPN 194
>03_06_0253 -
32666152-32666360,32666443-32666632,32666764-32666862,
32666999-32667094,32667408-32668361,32668683-32668901,
32669282-32669491,32669617-32669879,32670041-32671717,
32672702-32672852
Length = 1355
Score = 26.2 bits (55), Expect = 9.6
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 170 EPP-DSRGSTVSISLPD-SARLASALEAFRLIPR 265
+PP DSR VSIS+PD + E+FR PR
Sbjct: 403 QPPCDSRTLLVSISIPDWGSDDGITFESFRAAPR 436
>03_05_0751 - 27389910-27392105
Length = 731
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 264 RGISLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTS 148
+ ISLN SKAE + + ++ E SKQ F S
Sbjct: 257 KAISLNVSKAEVLKVKKNRQSEDLDVMEGRNSKQSAFCS 295
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 296 GRAAGGAKLPSAGLA*TPLRPKPA*PNP 213
G GG PS+ + TP P P+ P P
Sbjct: 135 GGGGGGGSTPSSPSSPTPTTPNPSTPTP 162
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 260 PRMVASHHRPLGRVHEP 310
P VA+H RPLG +H P
Sbjct: 36 PPTVATHTRPLGIIHPP 52
>01_01_0785 - 6076089-6077615
Length = 508
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 212 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAH 105
A + SLWSPES E + + Q R+V H
Sbjct: 336 AEVASLWSPESGEPITAEKIAEMKYTQAVAREVVRH 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,029,513
Number of Sequences: 37544
Number of extensions: 223925
Number of successful extensions: 688
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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