Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0082
(397 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC048251-1|AAH48251.1| 322|Homo sapiens ZDHHC12 protein protein. 31 1.0
AL441992-6|CAI15406.1| 210|Homo sapiens zinc finger, DHHC-type ... 31 1.0
EF623992-1|ABR25252.1| 354|Homo sapiens Uba6-specific E2 conjug... 31 1.8
X76930-1|CAA54248.1| 465|Homo sapiens hepatocyte nuclear factor... 30 3.2
BX842568-3|CAI40150.1| 1035|Homo sapiens family with sequence si... 30 3.2
AK125992-1|BAC86381.1| 910|Homo sapiens protein ( Homo sapiens ... 30 3.2
BC146778-1|AAI46779.1| 1555|Homo sapiens PCF11, cleavage and pol... 29 4.2
BC065384-1|AAH65384.2| 1555|Homo sapiens PCF11, cleavage and pol... 29 4.2
AF046935-1|AAC03107.1| 725|Homo sapiens PCF11p homolog protein. 29 4.2
AB020631-1|BAA74847.1| 1644|Homo sapiens KIAA0824 protein protein. 29 4.2
X87871-1|CAA61134.1| 465|Homo sapiens Hepatocyte nuclear factor... 29 5.6
BC016757-1|AAH16757.1| 220|Homo sapiens Sin3A-associated protei... 29 5.6
AF055993-1|AAC33316.1| 220|Homo sapiens mSin3A associated polyp... 29 5.6
Z49825-1|CAA89989.1| 504|Homo sapiens hepatocyte nuclear factor... 28 9.7
U97698-1|AAC51370.1| 421|Homo sapiens secretory mucin MUC6 prot... 28 9.7
U72969-1|AAB48082.1| 516|Homo sapiens hepatocyte nuclear factor... 28 9.7
L10333-1|AAA59950.1| 776|Homo sapiens nueroendocrine-specific p... 28 9.7
EF591040-1|ABQ52204.1| 474|Homo sapiens hepatocyte nuclear fact... 28 9.7
BC111694-1|AAI11695.1| 702|Homo sapiens RTN1 protein protein. 28 9.7
BC090862-1|AAH90862.1| 776|Homo sapiens reticulon 1 protein. 28 9.7
AY750848-1|AAU81930.1| 1032|Homo sapiens RTN3-A1 protein. 28 9.7
AY680697-1|AAT91238.1| 452|Homo sapiens hepatocyte nuclear fact... 28 9.7
AY427821-1|AAR02474.1| 1013|Homo sapiens reticulon 3-A protein. 28 9.7
AL132772-3|CAI18857.1| 467|Homo sapiens hepatocyte nuclear fact... 28 9.7
AL132772-2|CAC01303.1| 474|Homo sapiens hepatocyte nuclear fact... 28 9.7
AK096772-1|BAC04860.1| 577|Homo sapiens protein ( Homo sapiens ... 28 9.7
AK092533-1|BAC03911.1| 325|Homo sapiens protein ( Homo sapiens ... 28 9.7
AK092356-1|BAC03869.1| 890|Homo sapiens protein ( Homo sapiens ... 28 9.7
>BC048251-1|AAH48251.1| 322|Homo sapiens ZDHHC12 protein protein.
Length = 322
Score = 31.5 bits (68), Expect = 1.0
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -3
Query: 305 HALGRAAGGAKLPSAGLA*TPLRPKPA*PNPARICSLWSPESRE 174
H A G P++ TP P P P PA +CS SPE R+
Sbjct: 51 HLQAFAQPGTHFPTSNC--TPTPPTPVLPGPASLCSPASPELRQ 92
>AL441992-6|CAI15406.1| 210|Homo sapiens zinc finger, DHHC-type
containing 12 protein.
Length = 210
Score = 31.5 bits (68), Expect = 1.0
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -3
Query: 305 HALGRAAGGAKLPSAGLA*TPLRPKPA*PNPARICSLWSPESRE 174
H A G P++ TP P P P PA +CS SPE R+
Sbjct: 51 HLQAFAQPGTHFPTSNC--TPTPPTPVLPGPASLCSPASPELRQ 92
>EF623992-1|ABR25252.1| 354|Homo sapiens Uba6-specific E2
conjugating enzyme 1 protein.
Length = 354
Score = 30.7 bits (66), Expect = 1.8
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -3
Query: 308 VHALGRAAGGAKLPSAGLA*TPLRPKPA*PNPARICSLWSP 186
V A AAGGA P +GLA P P A + A + S W P
Sbjct: 45 VWAAAAAAGGAGGPGSGLAPLPGLPPSAAAHGAALLSHWDP 85
>X76930-1|CAA54248.1| 465|Homo sapiens hepatocyte nuclear factor 4
protein.
Length = 465
Score = 29.9 bits (64), Expect = 3.2
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 143 TRLVKSHCLEPPDSRGSTVSISLPD-SARLASALEAFRLIPRMVASHHRPLGRVHEPNV 316
T L E P RG + P S AS E ++L+P VA+ +PL + +P +
Sbjct: 401 THLSNGQMCEWPRPRGQAATPETPQPSPPGASGSEPYKLLPGAVATIVKPLSAIPQPTI 459
>BX842568-3|CAI40150.1| 1035|Homo sapiens family with sequence
similarity 47, member C protein.
Length = 1035
Score = 29.9 bits (64), Expect = 3.2
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 38 PDLRSRPARVKKNXDSIDLRDPNGLRRRVSRFECET-RLVKSH-CLEPPDSRGSTVSISL 211
P R P R + + + P + R+S E ++ SH CLEPP +RGS +
Sbjct: 383 PKTRVPPLRPETPKNGVSPLFPEPPKTRISNLRSEPPKIGVSHLCLEPPKTRGSHLRPEP 442
Query: 212 PDS 220
P++
Sbjct: 443 PET 445
>AK125992-1|BAC86381.1| 910|Homo sapiens protein ( Homo sapiens
cDNA FLJ44004 fis, clone TESTI4023546, weakly similar
to Sialidase (EC 3.2.1.18). ).
Length = 910
Score = 29.9 bits (64), Expect = 3.2
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 38 PDLRSRPARVKKNXDSIDLRDPNGLRRRVSRFECET-RLVKSH-CLEPPDSRGSTVSISL 211
P R P R + + + P + R+S E ++ SH CLEPP +RGS +
Sbjct: 258 PKTRVPPLRPETPKNGVSPLFPEPPKTRISNLRSEPPKIGVSHLCLEPPKTRGSHLRPEP 317
Query: 212 PDS 220
P++
Sbjct: 318 PET 320
>BC146778-1|AAI46779.1| 1555|Homo sapiens PCF11, cleavage and
polyadenylation factor subunit, homolog (S. cerevisiae)
protein.
Length = 1555
Score = 29.5 bits (63), Expect = 4.2
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -2
Query: 186 RESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSXFFLTRAGRLRRSG 37
R+ S+ S + HS + RRSP +RSM S +AG++R+SG
Sbjct: 477 RKRSRSRSPKSRSPIIHSPKRRDRRSPKRRQRSM-SPTSTPKAGKIRQSG 525
>BC065384-1|AAH65384.2| 1555|Homo sapiens PCF11, cleavage and
polyadenylation factor subunit, homolog (S. cerevisiae)
protein.
Length = 1555
Score = 29.5 bits (63), Expect = 4.2
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -2
Query: 186 RESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSXFFLTRAGRLRRSG 37
R+ S+ S + HS + RRSP +RSM S +AG++R+SG
Sbjct: 477 RKRSRSRSPKSRSPIIHSPKRRDRRSPKRRQRSM-SPTSTPKAGKIRQSG 525
>AF046935-1|AAC03107.1| 725|Homo sapiens PCF11p homolog protein.
Length = 725
Score = 29.5 bits (63), Expect = 4.2
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -2
Query: 186 RESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSXFFLTRAGRLRRSG 37
R+ S+ S + HS + RRSP +RSM S +AG++R+SG
Sbjct: 477 RKRSRSRSPKSRSPIIHSPKRRDRRSPKRRQRSM-SPTSTPKAGKIRQSG 525
>AB020631-1|BAA74847.1| 1644|Homo sapiens KIAA0824 protein protein.
Length = 1644
Score = 29.5 bits (63), Expect = 4.2
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -2
Query: 186 RESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSXFFLTRAGRLRRSG 37
R+ S+ S + HS + RRSP +RSM S +AG++R+SG
Sbjct: 566 RKRSRSRSPKSRSPIIHSPKRRDRRSPKRRQRSM-SPTSTPKAGKIRQSG 614
>X87871-1|CAA61134.1| 465|Homo sapiens Hepatocyte nuclear factor 4B
protein.
Length = 465
Score = 29.1 bits (62), Expect = 5.6
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 143 TRLVKSHCLEPPDSRGSTVSISLPD-SARLASALEAFRLIPRMVASHHRPLGRVHEPNV 316
T L E P RG + P S S E+++L+P VA+ +PL + +P +
Sbjct: 401 THLSNGQMCEWPRPRGQAATPETPQPSPPGGSGSESYKLLPGAVATIVKPLSAIPQPTI 459
>BC016757-1|AAH16757.1| 220|Homo sapiens Sin3A-associated protein,
30kDa protein.
Length = 220
Score = 29.1 bits (62), Expect = 5.6
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = -3
Query: 296 GRAAG-GAKLPSAGLA*TPLRPKPA*PNPARICSLWSPESR--EALNNVTLLVAFRIQNA 126
G AG GA++P AG P A P P ++C L R A N + + +
Sbjct: 35 GTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQLCCLREDGERCGRAAGNASFSKRIQKSIS 94
Query: 125 RRDVEAHLDRGDR 87
++ V+ LD+ R
Sbjct: 95 QKKVKIELDKSAR 107
>AF055993-1|AAC33316.1| 220|Homo sapiens mSin3A associated
polypeptide p30 protein.
Length = 220
Score = 29.1 bits (62), Expect = 5.6
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = -3
Query: 296 GRAAG-GAKLPSAGLA*TPLRPKPA*PNPARICSLWSPESR--EALNNVTLLVAFRIQNA 126
G AG GA++P AG P A P P ++C L R A N + + +
Sbjct: 35 GTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQLCCLREDGERCGRAAGNASFSKRIQKSIS 94
Query: 125 RRDVEAHLDRGDR 87
++ V+ LD+ R
Sbjct: 95 QKKVKIELDKSAR 107
>Z49825-1|CAA89989.1| 504|Homo sapiens hepatocyte nuclear factor 4
alpha (HNF4alpha4) protein.
Length = 504
Score = 28.3 bits (60), Expect = 9.7
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 143 TRLVKSHCLEPPDSRGSTVSISLPD-SARLASALEAFRLIPRMVASHHRPLGRVHEPNV 316
T L E P RG + P S S E ++L+P VA+ +PL + +P +
Sbjct: 440 THLSNGQMCEWPRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTI 498
>U97698-1|AAC51370.1| 421|Homo sapiens secretory mucin MUC6
protein.
Length = 421
Score = 28.3 bits (60), Expect = 9.7
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 191 STVSISLPDSARLASALEAFRLIPRMVASHH 283
STV++S S+ LAS+ AF PR AS H
Sbjct: 211 STVTVSPTPSSHLASSTIAFPSTPRTTASTH 241
>U72969-1|AAB48082.1| 516|Homo sapiens hepatocyte nuclear factor
4-alpha protein.
Length = 516
Score = 28.3 bits (60), Expect = 9.7
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 143 TRLVKSHCLEPPDSRGSTVSISLPD-SARLASALEAFRLIPRMVASHHRPLGRVHEPNV 316
T L E P RG + P S S E ++L+P VA+ +PL + +P +
Sbjct: 452 THLSNGQMCEWPRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTI 510
>L10333-1|AAA59950.1| 776|Homo sapiens nueroendocrine-specific
protein A protein.
Length = 776
Score = 28.3 bits (60), Expect = 9.7
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 11 EPRHRXELSPDLRSRPARVKKNXDSIDLRDPNGLRRRVSRFECETRLVKSHCLE 172
E +H+ + P+L + K I ++ P G+R E +++K H LE
Sbjct: 204 EVKHQEQHHPELEDKDLDFKNKDTDISIK-PEGVREPDKPAPVEGKIIKDHLLE 256
>EF591040-1|ABQ52204.1| 474|Homo sapiens hepatocyte nuclear factor
4, alpha protein.
Length = 474
Score = 28.3 bits (60), Expect = 9.7
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 143 TRLVKSHCLEPPDSRGSTVSISLPD-SARLASALEAFRLIPRMVASHHRPLGRVHEPNV 316
T L E P RG + P S S E ++L+P VA+ +PL + +P +
Sbjct: 410 THLSNGQMCEWPRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTI 468
>BC111694-1|AAI11695.1| 702|Homo sapiens RTN1 protein protein.
Length = 702
Score = 28.3 bits (60), Expect = 9.7
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 11 EPRHRXELSPDLRSRPARVKKNXDSIDLRDPNGLRRRVSRFECETRLVKSHCLE 172
E +H+ + P+L + K I ++ P G+R E +++K H LE
Sbjct: 130 EVKHQEQHHPELEDKDLDFKNKDTDISIK-PEGVREPDKPAPVEGKIIKDHLLE 182
>BC090862-1|AAH90862.1| 776|Homo sapiens reticulon 1 protein.
Length = 776
Score = 28.3 bits (60), Expect = 9.7
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 11 EPRHRXELSPDLRSRPARVKKNXDSIDLRDPNGLRRRVSRFECETRLVKSHCLE 172
E +H+ + P+L + K I ++ P G+R E +++K H LE
Sbjct: 204 EVKHQEQHHPELEDKDLDFKNKDTDISIK-PEGVREPDKPAPVEGKIIKDHLLE 256
>AY750848-1|AAU81930.1| 1032|Homo sapiens RTN3-A1 protein.
Length = 1032
Score = 28.3 bits (60), Expect = 9.7
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Frame = -2
Query: 276 EATIRGISLNASKAEASLAESGKDMLTVEP------RESGGSKQCDFTSRVSHSKRETRR 115
E +GI + A +++E D T P ESGGS+ D S+ S +ET
Sbjct: 660 ETRDKGIVDSERNAFKAISEKMTDFKTTPPVEVLHENESGGSEIKDIGSKYSEQSKETNG 719
Query: 114 RSPFG 100
P G
Sbjct: 720 SEPLG 724
>AY680697-1|AAT91238.1| 452|Homo sapiens hepatocyte nuclear factor
4 alpha, transcript variant 8 protein.
Length = 452
Score = 28.3 bits (60), Expect = 9.7
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 143 TRLVKSHCLEPPDSRGSTVSISLPD-SARLASALEAFRLIPRMVASHHRPLGRVHEPNV 316
T L E P RG + P S S E ++L+P VA+ +PL + +P +
Sbjct: 388 THLSNGQMCEWPRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTI 446
>AY427821-1|AAR02474.1| 1013|Homo sapiens reticulon 3-A protein.
Length = 1013
Score = 28.3 bits (60), Expect = 9.7
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Frame = -2
Query: 276 EATIRGISLNASKAEASLAESGKDMLTVEP------RESGGSKQCDFTSRVSHSKRETRR 115
E +GI + A +++E D T P ESGGS+ D S+ S +ET
Sbjct: 641 ETRDKGIVDSERNAFKAISEKMTDFKTTPPVEVLHENESGGSEIKDIGSKYSEQSKETNG 700
Query: 114 RSPFG 100
P G
Sbjct: 701 SEPLG 705
>AL132772-3|CAI18857.1| 467|Homo sapiens hepatocyte nuclear factor
4, alpha protein.
Length = 467
Score = 28.3 bits (60), Expect = 9.7
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 143 TRLVKSHCLEPPDSRGSTVSISLPD-SARLASALEAFRLIPRMVASHHRPLGRVHEPNV 316
T L E P RG + P S S E ++L+P VA+ +PL + +P +
Sbjct: 403 THLSNGQMCEWPRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTI 461
>AL132772-2|CAC01303.1| 474|Homo sapiens hepatocyte nuclear factor
4, alpha protein.
Length = 474
Score = 28.3 bits (60), Expect = 9.7
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 143 TRLVKSHCLEPPDSRGSTVSISLPD-SARLASALEAFRLIPRMVASHHRPLGRVHEPNV 316
T L E P RG + P S S E ++L+P VA+ +PL + +P +
Sbjct: 410 THLSNGQMCEWPRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTI 468
>AK096772-1|BAC04860.1| 577|Homo sapiens protein ( Homo sapiens
cDNA FLJ39453 fis, clone PROST2010046, highly similar to
Homo sapiens secretory mucin MUC6 (MUC6) mRNA. ).
Length = 577
Score = 28.3 bits (60), Expect = 9.7
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 191 STVSISLPDSARLASALEAFRLIPRMVASHH 283
STV++S S+ LAS+ AF PR AS H
Sbjct: 367 STVTVSPTPSSHLASSTIAFPSTPRTTASTH 397
>AK092533-1|BAC03911.1| 325|Homo sapiens protein ( Homo sapiens
cDNA FLJ35214 fis, clone PROST1000512, highly similar to
Homo sapiens secretory mucin MUC6 (MUC6) mRNA. ).
Length = 325
Score = 28.3 bits (60), Expect = 9.7
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 191 STVSISLPDSARLASALEAFRLIPRMVASHH 283
STV++S S+ LAS+ AF PR AS H
Sbjct: 198 STVTVSPTPSSHLASSTIAFPSTPRTTASTH 228
>AK092356-1|BAC03869.1| 890|Homo sapiens protein ( Homo sapiens
cDNA FLJ35037 fis, clone OCBBF2016729, moderately
similar to Probable acyl-CoA dehydrogenase - Deinococcus
radiodurans. ).
Length = 890
Score = 28.3 bits (60), Expect = 9.7
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = -2
Query: 327 PQFRTFGSCTRPSGRWCEATIRGISLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTS 148
P R++ + RP +WC R S S EAS A + + L + P ES +
Sbjct: 613 PLTRSYHTWARPQSQWCPTGSRSYS---SVPEASPAHTSRGGLVISP-ESLSPPDRELYH 668
Query: 147 RVSH 136
R+ H
Sbjct: 669 RLKH 672
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,526,413
Number of Sequences: 237096
Number of extensions: 1092221
Number of successful extensions: 2841
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2837
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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