Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0082
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   2.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   2.9  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   6.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   9.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   9.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.0  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 276 RTTGRSAECMNQMSETAVPLVLSS 347
           +  G+  +C N MSE  V ++L +
Sbjct: 170 KENGKEFDCHNYMSELTVDILLET 193


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 323 SFGHLVHALGRAAGGAKLPSAGLA*TPLRPKP 228
           S   LV A+   AGG   PSAG    P+ P P
Sbjct: 393 SMSALVSAVRSPAGGQLPPSAG---APMPPIP 421


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -2

Query: 315 TFGSCTRPSGRWCEATIRGISLNASKAEASL 223
           T   C R     CE+ I+ IS++    E  +
Sbjct: 170 TLTDCLRSELAQCESNIKVISISPDLVETDM 200


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 14/53 (26%), Positives = 21/53 (39%)
 Frame = -2

Query: 174 GSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSXFFLTRAGRLRRSGDNSXRCR 16
           GS     TS+ S  +R+T+        R  L       + R RR  + +  CR
Sbjct: 400 GSMTVSVTSKPSTMERQTQTEVWIPKWRQFLYCLAGDESFRKRRQREAAGNCR 452


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 284 RPLGRVHEPNVRNCGSSRTEQYY 352
           R  G V E N++   +  TE+YY
Sbjct: 100 RHFGIVGECNIQYALNPNTEEYY 122


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 162  CDFTSRVSHSKRETRRRSP 106
            CD    V HS ++T+++ P
Sbjct: 1487 CDSKLIVDHSSQKTQQQQP 1505


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,902
Number of Sequences: 438
Number of extensions: 1787
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)