Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0080
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.48 
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.5  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   7.9  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   7.9  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.9  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   7.9  
SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyc...    25   7.9  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    25   7.9  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 428 SGCGRCRVWSMFVRYVRFSS*YFNIM-RSKLYIF 526
           +GCG+  VW  +VR+V F   Y     +  LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -1

Query: 207 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 70
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 66  RVFDGVTQSGLKTPPRGPGRV 128
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 465 TNIDQTRHRPHPLPVQTXHAPV 400
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +2

Query: 2   PVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPW 160
           PV +   G  TV+   P+S+  +    +P+ P  A+       + CL +   W
Sbjct: 132 PVSLEVRGRNTVTFYGPTSIFGTSFTSSPRPPPSASIEDTYPIIHCLQLFFKW 184


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 66  RVFDGVTQSGLKTPPRGPGRV 128
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


>SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 290

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
 Frame = -2

Query: 269 LHVHPHLNFQGPQRVSGHRRKCGALRVP---NHISLL*DSMELERSGRKENSSRTSRRRL 99
           LH   H+N Q   R S   + C  +++P      +LL D +++          +  R   
Sbjct: 140 LHGRSHINEQWSMR-SYVSKNCIQMKIPASNQRKTLLRDVLKIFDEPNLHIGLKAERMHH 198

Query: 98  QATLG--YPVEHSFLKTRERLLKRFR 27
              +G  Y +   FLKT+E +L ++R
Sbjct: 199 FECIGNLYLIGPKFLKTKEAVLNQYR 224


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 571 VGSSPKVRRFRECHIKYIQF 512
           +G   ++R FREC I+ +QF
Sbjct: 404 LGCGSRIRGFRECLIQQLQF 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,088
Number of Sequences: 5004
Number of extensions: 53099
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)