Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0078
         (988 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c...    60   6e-10
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    56   1e-08
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy...    39   0.001
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc...    30   0.44 

>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 59.7 bits (138), Expect = 6e-10
 Identities = 30/79 (37%), Positives = 42/79 (53%)
 Frame = +1

Query: 10  FXKEAISXXKVVVXXKSXCPXXKLAKDVFEKVKQPIKVIELNERDDGNTXQXNLAQLTGF 189
           F ++AIS   V V  KS CP  K AK+   K   P K  EL++ ++G+  Q  L + T  
Sbjct: 8   FVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQ 67

Query: 190 RTVPQVFINGNCVGGGSDV 246
            TVP +F     +GG SD+
Sbjct: 68  STVPSIFFRNQFIGGNSDL 86


>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 55.6 bits (128), Expect = 1e-08
 Identities = 29/84 (34%), Positives = 45/84 (53%)
 Frame = +1

Query: 1   IQQFXKEAISXXKVVVXXKSXCPXXKLAKDVFEKVKQPIKVIELNERDDGNTXQXNLAQL 180
           ++ F   A++   VVV  KS CP     + V    K   +V +++  ++G+  Q  L + 
Sbjct: 4   VESFVDSAVADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKK 63

Query: 181 TGFRTVPQVFINGNCVGGGSDVKA 252
           TG RTVP +FI+   VGG SD +A
Sbjct: 64  TGQRTVPNIFIHQKHVGGNSDFQA 87


>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 166

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +1

Query: 40  VVVXXKSXCPXXKLAKDVFE---KVKQPIKVIELNERDDGNTXQXNLAQLTGFRTVPQVF 210
           V++  +  CP    AK +     ++  P  V+E+ + +     +  L+ ++   T+P +F
Sbjct: 68  VIIFSRPGCPYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQELRDWLSSISDISTMPNIF 127

Query: 211 INGNCVGGGSDVKA 252
           + G+ +GG   V+A
Sbjct: 128 VGGHSIGGSDSVRA 141


>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 146

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 169 LAQLTGFRTVPQVFINGNCVGGGSDVKAXMN 261
           + + + + T+PQ++ING  V GGSD+ A M+
Sbjct: 86  IKEFSDWPTIPQLYINGEFV-GGSDILASMH 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,981
Number of Sequences: 5004
Number of extensions: 31885
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)