Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0078
(988 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0458 + 25370542-25370597,25371591-25371679,25372687-253727... 71 1e-12
02_05_0126 + 26050093-26050247,26051654-26051727,26051819-260519... 66 4e-11
02_04_0627 + 24585712-24585845,24586415-24586503,24587039-245871... 59 6e-09
08_02_1625 + 28336168-28336409,28336491-28336564,28337162-283372... 46 6e-05
06_01_0847 - 6451525-6451678,6452870-6453066,6454300-6454591,645... 33 0.35
01_04_0016 + 15106791-15107102 31 1.1
11_06_0601 + 25407591-25407920 29 4.3
11_06_0603 + 25416922-25417251 29 5.7
>04_04_0458 +
25370542-25370597,25371591-25371679,25372687-25372785,
25372960-25373054
Length = 112
Score = 70.9 bits (166), Expect = 1e-12
Identities = 37/82 (45%), Positives = 46/82 (56%)
Frame = +1
Query: 16 KEAISXXKVVVXXKSXCPXXKLAKDVFEKVKQPIKVIELNERDDGNTXQXNLAQLTGFRT 195
KE ++ VVV KS CP K +FE++ K IEL+ DG+ Q LA+ TG RT
Sbjct: 7 KETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRT 66
Query: 196 VPQVFINGNCVGGGSDVKAXMN 261
VP VFING +GG D A N
Sbjct: 67 VPNVFINGKHIGGCDDTLALNN 88
>02_05_0126 +
26050093-26050247,26051654-26051727,26051819-26051917,
26052003-26052070
Length = 131
Score = 66.1 bits (154), Expect = 4e-11
Identities = 31/78 (39%), Positives = 44/78 (56%)
Frame = +1
Query: 10 FXKEAISXXKVVVXXKSXCPXXKLAKDVFEKVKQPIKVIELNERDDGNTXQXNLAQLTGF 189
F + AI ++ + K+ CP AK +F +K+ ++EL+ R+DG Q L L G
Sbjct: 33 FVQNAIYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGR 92
Query: 190 RTVPQVFINGNCVGGGSD 243
TVPQVF+NG VGG D
Sbjct: 93 HTVPQVFVNGQHVGGSDD 110
>02_04_0627 +
24585712-24585845,24586415-24586503,24587039-24587137,
24587326-24587405
Length = 133
Score = 58.8 bits (136), Expect = 6e-09
Identities = 31/79 (39%), Positives = 41/79 (51%)
Frame = +1
Query: 16 KEAISXXKVVVXXKSXCPXXKLAKDVFEKVKQPIKVIELNERDDGNTXQXNLAQLTGFRT 195
KE ++ VVV K+ CP K + ++ K +EL+ DG+ Q LA TG RT
Sbjct: 33 KEIVASSPVVVFSKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRT 92
Query: 196 VPQVFINGNCVGGGSDVKA 252
VP VFI G +GG D A
Sbjct: 93 VPCVFIKGKHIGGCDDTMA 111
>08_02_1625 +
28336168-28336409,28336491-28336564,28337162-28337236,
28337433-28337459,28339261-28339634,28339746-28340492
Length = 512
Score = 45.6 bits (103), Expect = 6e-05
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +1
Query: 16 KEAISXXKVVVXXKSXCPXXKLAKDVFEKVKQPIKVIELNERD-DGNTXQXNLAQLTGFR 192
K ++ VV+ KS C K +F+++ VIEL++ G Q L +LTG
Sbjct: 64 KRTLADNPVVIYSKSWCSYSMEVKALFKRIGVQPHVIELDQLGAQGPQLQKVLERLTGQS 123
Query: 193 TVPQVFINGNCVGG 234
TVP VFI G +GG
Sbjct: 124 TVPNVFIGGKHIGG 137
>06_01_0847 -
6451525-6451678,6452870-6453066,6454300-6454591,
6454622-6454654,6454869-6455102,6455204-6455259,
6455552-6456754
Length = 722
Score = 33.1 bits (72), Expect = 0.35
Identities = 20/71 (28%), Positives = 38/71 (53%)
Frame = +1
Query: 37 KVVVXXKSXCPXXKLAKDVFEKVKQPIKVIELNERDDGNTXQXNLAQLTGFRTVPQVFIN 216
++++ K C K+ + F + K +K +E+N D + + L TG TVP+V+ N
Sbjct: 244 RIIIYTKLGCEDCKMVRS-FMRQKM-LKYVEINI-DIFPSRKMELENNTGSSTVPKVYFN 300
Query: 217 GNCVGGGSDVK 249
+GG +++K
Sbjct: 301 DLLIGGLTELK 311
>01_04_0016 + 15106791-15107102
Length = 103
Score = 31.5 bits (68), Expect = 1.1
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 40 VVVXXKSXCPXXKLAKDVFEKVKQPIKVIELNERDDGNTXQXNLAQLTG-FRTVPQVFIN 216
VV+ S C +F ++ V+EL+E G + LA+L G VP VFI
Sbjct: 13 VVIFSMSSCCMCHTVTRLFCELGVNPTVVELDEDPRGKEMEKALARLLGRSPAVPAVFIG 72
Query: 217 GNCVGGGSDV 246
G VG V
Sbjct: 73 GRLVGSTDKV 82
>11_06_0601 + 25407591-25407920
Length = 109
Score = 29.5 bits (63), Expect = 4.3
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Frame = +1
Query: 28 SXXKVVVXXKSXCPXXKLAKDVFEKVKQPIKVIELNERDDGNTXQXNLAQLT------GF 189
S VVV KS C + ++ V EL+ G + LA+ G
Sbjct: 10 SERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDRDPLGKEMEKELARRLYGSSGRGG 69
Query: 190 RTVPQVFINGNCVGGGSDVKA 252
VP VFI G+ VGG S V A
Sbjct: 70 PAVPAVFIGGSLVGGTSKVMA 90
>11_06_0603 + 25416922-25417251
Length = 109
Score = 29.1 bits (62), Expect = 5.7
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Frame = +1
Query: 28 SXXKVVVXXKSXCPXXKLAKDVFEKVKQPIKVIELNERDDGNTXQXNLAQLT------GF 189
S VVV KS C + ++ V EL+ G + LA+ G
Sbjct: 10 SERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDREPLGKEMERELARRLYGSGGRGG 69
Query: 190 RTVPQVFINGNCVGGGSDV 246
VP VFI G+ VGG S V
Sbjct: 70 PAVPAVFIGGSLVGGTSKV 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,861,312
Number of Sequences: 37544
Number of extensions: 252098
Number of successful extensions: 368
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2881826040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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