Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0077
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    27   1.7  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   3.0  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   3.0  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   4.0  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    25   4.0  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   4.0  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   5.3  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   5.3  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   5.3  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   5.3  
SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz...    25   5.3  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   7.0  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    25   7.0  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    24   9.3  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    24   9.3  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    24   9.3  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    24   9.3  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    24   9.3  

>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 164 PWNPIEGRYGSEREEHRICGGVRILSADLEIQVRDVRGDVAP 289
           P+ P+EG Y + ++ HRI    R   A LE ++R V+    P
Sbjct: 3   PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = -2

Query: 277 STYIPHLNFKVRREYPDTAANAVLFAFRTISPFYRIPWNSNAQA 146
           STY P L   V     D   N     F  I+P+Y   WN  A A
Sbjct: 257 STYWPALAAPVYPSMKDVPNNPFT-PFSPINPYYAKSWNHTASA 299


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -3

Query: 216 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 79
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 362 FPYLHYSID*RLFTLETCCGYGYEPARHL 276
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 263 SPEFQGPQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 102
           +P  + P  VSGH      LR+   IS    SM +ERS       R ++  + +
Sbjct: 611 TPLAKKPLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
 Frame = -3

Query: 444 HPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH-----LGDLLRIWVRTGAT 280
           HP  ++ R+ P+   N Y+  +  +  L    +   L + +     +G ++ ++V +G+T
Sbjct: 254 HPFYMEQRYIPIGTTNTYTSASHGVLMLSSNGMEVLLRSTYIKYRMIGGIIDLFVYSGST 313

Query: 279 -SPRTSLT*ISRSAESIRTP 223
            SP+ +   I +  +SI TP
Sbjct: 314 VSPKYT---IQQYVQSIGTP 330


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 75  RVFDGVTQSGLKTPPRGPGRV 137
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +2

Query: 11  PVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPW 169
           PV +   G  TV+   P+S+  +    +P+ P  A+       + CL +   W
Sbjct: 132 PVSLEVRGRNTVTFYGPTSIFGTSFTSSPRPPPSASIEDTYPIIHCLQLFFKW 184


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = -2

Query: 376 SNLPTSLTYIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFKVRREYPDTAANAVLFAF 197
           S   TSL+      R S+P R   D G+++   +TYIPH   K   ++     +A     
Sbjct: 212 SEKDTSLSRRSSRGRSSAPKR-RKDSGSSKTT-ATYIPHNPSKKSSQHLPLLPDASFELE 269

Query: 196 RTISPFYRIP 167
           R++S  Y+ P
Sbjct: 270 RSVSRSYQSP 279


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 75  RVFDGVTQSGLKTPPRGPGRV 137
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
           Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 263 SPEFQGPQRVSGHRRKCGALR 201
           SPEF G  RV+ HR   G L+
Sbjct: 60  SPEFSGMSRVARHRLVYGLLK 80


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 11  PVPI-PEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERS 127
           P+PI P+    ++    P+S  TS R   P  P+D    S
Sbjct: 338 PIPILPKMKDTSIPAAEPASSTTSARDQTPSTPKDVGSPS 377


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 180 SIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 79
           ++   GTR L+ K    PD+  ++ G + L   T
Sbjct: 8   NVNIQGTRVLKNKLGKIPDIDISTDGKYLLSAST 41


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +3

Query: 213 AFAAVSGYSLRTLKFR*GMYVEMSRRFVPISAAGLQG 323
           A   + G      KF  GM+      ++P +  G+QG
Sbjct: 393 AVPVIKGVKSENEKFAGGMFTTTVEGYIPTTGRGIQG 429


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 135 LFPDLSAASSGHFGLPRRT 79
           LFP +S  + G F +PRRT
Sbjct: 386 LFPSVSVENFGCFQVPRRT 404


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 2   KGNPVPIPEPGSGTVSI 52
           K NPV I EPG G  SI
Sbjct: 202 KNNPVLIGEPGVGKTSI 218


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 221  RKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQATLGYPVEHSFLK 66
            +K   + +P HI LL +  E + + +++ +   SRRR    L    EH  LK
Sbjct: 1037 QKISEMNIPGHIHLLRELEEEKSNTQRKIAHFESRRRYLTNL---YEHIVLK 1085


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 432 VQTRHAPVLRANPYSEVTDPI 370
           +++ H  +L  +PY +V DPI
Sbjct: 287 LKSYHLSILEVDPYFQVNDPI 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,035,004
Number of Sequences: 5004
Number of extensions: 42682
Number of successful extensions: 141
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)