Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0077
         (446 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr...    31   0.50 
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p...    31   0.50 
AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical...    28   3.6  
Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical pr...    27   4.7  
U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical pr...    27   4.7  
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    27   4.7  
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U08022-1|AAA17722.1|  515|Caenorhabditis elegans STE12 transcrip...    27   8.2  
AL110501-6|CAH19094.1|  466|Caenorhabditis elegans Hypothetical ...    27   8.2  
AL110501-5|CAB54505.1|  552|Caenorhabditis elegans Hypothetical ...    27   8.2  
AC006620-3|AAF39779.2|  579|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 30.7 bits (66), Expect = 0.50
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -2

Query: 439 ASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTR-GSSP--WRPAADMGTNR 287
           A  P P+ P P ++   +S   NLP S+   +   R G SP  W P A   TNR
Sbjct: 408 APPPVPSNPPPSNEQQSQSRVQNLPDSVRSAVSPRRSGKSPRQWPPPAMPTTNR 461


>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 30.7 bits (66), Expect = 0.50
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -2

Query: 439 ASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTR-GSSP--WRPAADMGTNR 287
           A  P P+ P P ++   +S   NLP S+   +   R G SP  W P A   TNR
Sbjct: 408 APPPVPSNPPPSNEQQSQSRVQNLPDSVRSAVSPRRSGKSPRQWPPPAMPTTNR 461


>AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical
           protein C31B8.1 protein.
          Length = 229

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 427 NPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSP 320
           +P +  P +Q LF S+G  LP      I +   SSP
Sbjct: 19  SPFKASPSNQKLFISFGVGLPIFFQMCIFTASYSSP 54


>Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical
           protein R11A8.1 protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = -2

Query: 250 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 122
           K+ +E  D A N +      FR   I+PF   P+ +N Q   + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482


>U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical
           protein C04E7.4 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 234 IRTPPQMRCSSRSEPYLPSIGFHGT 160
           I T  Q + SS  +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -3

Query: 210 CSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIETVP 37
           C++   P+L  I    T+ +RQ   + P+L +A   H       + FK E     T+P
Sbjct: 80  CTTNFTPFLRPITVPVTKGVRQGDPISPNLFSACLEHVFRKLSCIEFKGEAEDYNTIP 137


>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
            ZK270.2e protein.
          Length = 4541

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -3

Query: 198  SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 46
            S+  LP+ GF    T   K   +P+ S A +G      RT  F  EGT  E
Sbjct: 1216 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1264


>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
            ZK270.2d protein.
          Length = 4648

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -3

Query: 198  SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 46
            S+  LP+ GF    T   K   +P+ S A +G      RT  F  EGT  E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253


>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
            ZK270.2a protein.
          Length = 4530

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -3

Query: 198  SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 46
            S+  LP+ GF    T   K   +P+ S A +G      RT  F  EGT  E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253


>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
            ZK270.2e protein.
          Length = 4541

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -3

Query: 198  SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 46
            S+  LP+ GF    T   K   +P+ S A +G      RT  F  EGT  E
Sbjct: 1216 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1264


>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
            ZK270.2d protein.
          Length = 4648

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -3

Query: 198  SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 46
            S+  LP+ GF    T   K   +P+ S A +G      RT  F  EGT  E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253


>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
            ZK270.2a protein.
          Length = 4530

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -3

Query: 198  SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 46
            S+  LP+ GF    T   K   +P+ S A +G      RT  F  EGT  E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical
           protein T20F7.5 protein.
          Length = 1065

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -2

Query: 163 NSNAQAEKKTLPG-PLGGVFRPLWVTPSNTRF*RRGNDY*NGSAAGFRNRNRIPF 2
           NSN  A      G P+    RP   +  N +F  +  +  NG+ + FRN+N   F
Sbjct: 20  NSNQAAHHGNHAGQPIFHGARPFGASNGNGKFRNQNTNRNNGNGSHFRNQNNNTF 74


>U08022-1|AAA17722.1|  515|Caenorhabditis elegans STE12
           transcriptional activator protein.
          Length = 515

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +2

Query: 11  PVPIPEPGSGTVSIIVPSSLKT---SVRRGNPKWPEDAAERS 127
           P P PE  SGT   +  S + T   +V   +   PEDAAE S
Sbjct: 355 PTPAPEAASGTAD-VTASPINTAFPAVVTSSTPMPEDAAEVS 395


>AL110501-6|CAH19094.1|  466|Caenorhabditis elegans Hypothetical
           protein Y79H2A.1b protein.
          Length = 466

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +2

Query: 11  PVPIPEPGSGTVSIIVPSSLKT---SVRRGNPKWPEDAAERS 127
           P P PE  SGT   +  S + T   +V   +   PEDAAE S
Sbjct: 306 PTPAPEAASGTAD-VTASPINTAFPAVVTSSTPMPEDAAEVS 346


>AL110501-5|CAB54505.1|  552|Caenorhabditis elegans Hypothetical
           protein Y79H2A.1a protein.
          Length = 552

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +2

Query: 11  PVPIPEPGSGTVSIIVPSSLKT---SVRRGNPKWPEDAAERS 127
           P P PE  SGT   +  S + T   +V   +   PEDAAE S
Sbjct: 392 PTPAPEAASGTAD-VTASPINTAFPAVVTSSTPMPEDAAEVS 432


>AC006620-3|AAF39779.2|  579|Caenorhabditis elegans Hypothetical
           protein C51G7.4 protein.
          Length = 579

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +2

Query: 11  PVPIPEPGSGTVSIIVPSSLKT---SVRRGNPKWPEDAAERS 127
           P P PE  SGT   +  S + T   +V   +   PEDAAE S
Sbjct: 419 PTPAPEAASGTAD-VTASPINTAFPAVVTSSTPMPEDAAEVS 459


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,446,310
Number of Sequences: 27780
Number of extensions: 252392
Number of successful extensions: 911
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)