Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0075
(414 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.87
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014) 28 2.6
SB_7172| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_40185| Best HMM Match : WD40 (HMM E-Value=0) 28 2.6
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_48009| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11) 27 4.6
SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35) 27 6.1
SB_9526| Best HMM Match : Big_1 (HMM E-Value=1.8) 27 6.1
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 27 8.1
SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14) 27 8.1
>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 30.7 bits (66), Expect = 0.50
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 126 SRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRIIPR 266
+R+ E +L + H L PP +S SA +SA F IPR
Sbjct: 35 ARYRAEAQLNRRHGLSPPTPPEGISPLSSSSSASSSSAASPFHTIPR 81
>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1283
Score = 29.9 bits (64), Expect = 0.87
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -2
Query: 293 ERPVVRSYHPRDYPERL*GRSQPSRIRQG-YAHCGAPRVGR 174
+ P+ R H RD P P R+ +G Y H G P + R
Sbjct: 856 DTPMGRGMHQRDMPPEWHPAGNPRRVDEGPYMHDGPPHINR 896
>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1560
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 81 DSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDS 185
DS ++DP G+RR++ F E R V L+ D+
Sbjct: 101 DSPPIKDPPGVRRKIEEFTIEQRAVNKRRLDLLDT 135
>SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
Length = 1236
Score = 28.3 bits (60), Expect = 2.6
Identities = 21/82 (25%), Positives = 34/82 (41%)
Frame = +3
Query: 45 LRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSA 224
LRS RVKKKTD + + + ++C++ + P G +I+ P S
Sbjct: 1121 LRSTSYRVKKKTDCYKVPSEVPDKTPTAAYDCDSSADEDDTPATPAPPGIPTAITDPPSR 1180
Query: 225 RLASALEAFRIIPRMVASHHRP 290
+ +A R + S H P
Sbjct: 1181 DVPPQSDADASETRAMDSSHCP 1202
>SB_7172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 28.3 bits (60), Expect = 2.6
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -2
Query: 347 LLSTRGTAVSDIWFMHSAERPVVRSYHPRDYP--ERL*GRSQP 225
+L +RG VSDI +HS +PV H R P + L RSQP
Sbjct: 149 ILHSRGQQVSDI--LHSRGQPVSNILHYRGQPVSDILHSRSQP 189
Score = 27.1 bits (57), Expect = 6.1
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -2
Query: 347 LLSTRGTAVSDIWFMHSAERPV--VRSYHPRDYPERL*GRSQP 225
+L +RG VSDI +HS +PV + + + P+ L RSQP
Sbjct: 26 ILHSRGQPVSDI--LHSRSQPVSDILHFWGQPVPDILHSRSQP 66
>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
Length = 503
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 346 CSVREEPQFRTFGSCTRPSG 287
CS R P+ R F +CT PSG
Sbjct: 437 CSARTPPRRRPFTACTSPSG 456
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 196 VEPRESGGSK-QCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRS 41
+E +S G + +CD TSR+S R F ++R++ F + S RS
Sbjct: 2037 IEDLDSFGQRDRCDGTSRISRQSRSRIETDVFPTKRNLSHSFKDVKTSESERS 2089
>SB_48009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 27.5 bits (58), Expect = 4.6
Identities = 22/87 (25%), Positives = 40/87 (45%)
Frame = +3
Query: 48 RSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSAR 227
R D + KT +++ R+ L R + RFE + V + + ++ GS SLP + +
Sbjct: 48 RGNDQAPRGKTVAMEQRELE-LERMIDRFEKQQSEVMNAAQKFEEATGSLPDPSLPVANQ 106
Query: 228 LASALEAFRIIPRMVASHHRPLGRVHE 308
L A+ R R++ S R+ +
Sbjct: 107 LELAVRKIREHIRVIISTREENNRLRK 133
>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
Length = 1692
Score = 27.5 bits (58), Expect = 4.6
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Frame = +3
Query: 102 PNGLRRRVSRFECET----RLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 251
PN LR R S F L CL PP++ G I L D + LA A+
Sbjct: 1246 PNDLRGRWSDFFSNLFQLEHLELDRCLRPPNAEGKPWLIILSDGSDLAYGFAAY 1299
>SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 347 LLSTRGTAVSDIWFMHSAERPVVRSYHPRDY 255
LLS G A++D+ +H A+ P +Y P Y
Sbjct: 151 LLSAFGMALADV--VHEAQEPCAHTYEPDSY 179
>SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -3
Query: 286 RWCEATIRGIILNASKAEASLAESGKDMLTVEPRESGGSKQC 161
RW + +LN S + S G D +++ R++ +K C
Sbjct: 144 RWISGALLKEVLNGSGYKTSYVARGCDRMSISDRQTPENKHC 185
>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
Length = 1242
Score = 27.1 bits (57), Expect = 6.1
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = -3
Query: 292 SGRWCEATIRGIILNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRR 116
SG + T + I K + + AE+G D+L ++Q TS++ ++++TRR
Sbjct: 1013 SGNFKMDTAKSEIGGNFKMDTANAENGVDVLKTSASMVFNNEQFSATSQIKGTEKDTRR 1071
>SB_9526| Best HMM Match : Big_1 (HMM E-Value=1.8)
Length = 649
Score = 27.1 bits (57), Expect = 6.1
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = -3
Query: 292 SGRWCEATIRGIILNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRR 116
SG + T + I K + + AE+G D+L ++Q TS++ ++++TRR
Sbjct: 232 SGNFKMDTAKSEIGGNFKMDTANAENGVDVLKTSASMVFNNEQFSATSQIKGTEKDTRR 290
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 26.6 bits (56), Expect = 8.1
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = -1
Query: 267 SAGLS*TPLRPKPA*PNPARICSLWSPESREALNNVTLLVAF--RIQNARRDVEAHLDRG 94
++ +S PL P A P +CSL + R V++LVA R+ D + R
Sbjct: 3138 TSSVSGDPLNPTHASPT---MCSL-THRVRAHHQPVSVLVASEGRVVTGSHDRTLKVFRT 3193
Query: 93 DRCYRFFS*HVHHGSEGPDITQFDVGARN 7
D C R F+ H H IT+ V + N
Sbjct: 3194 DHCVRIFTLHGHRDG----ITELKVDSNN 3218
>SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)
Length = 1931
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 33 LYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPP 179
L D+R++ A V D++ RD GL R + + V+++C P
Sbjct: 1349 LIVDIRAKFATVLGSVDNLGARDAQGLSRDILMLLRLAQDVQTYCASAP 1397
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,060,385
Number of Sequences: 59808
Number of extensions: 252075
Number of successful extensions: 831
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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