Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0073
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    29   0.66 
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   4.7  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   4.7  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    25   8.1  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   8.1  

>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +3

Query: 426 ADIIDRAPLPPNRVSNETMKVVVFQRRSAKRSPTYATPLMSPYNARLESSSTG---SSFP 596
           A ++ R P   NR SN      +  RRS   SP+   P+ +   +  + S+TG    + P
Sbjct: 312 ASMMSRTPNTLNRPSNYRSHSSMGTRRSPLNSPSQLDPISNENESDTDDSNTGLRNRTSP 371

Query: 597 ADSPKP 614
             +P P
Sbjct: 372 TAAPPP 377


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 447 PLPPNRVSNETMKVVVFQRRSAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 620
           P P     N+T    + ++ + K++ T+   L S    RL +SS  SS PA   +  P
Sbjct: 242 PSPIEEDYNDTKARRITRKGTKKKTVTFDPSLESVPQKRLNASSNVSSNPAKKTRVSP 299


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +3

Query: 432 IIDRAPLPPNRVSNETMKVVVFQRRSAKRSPTYATPLMSPYNARLESSSTGSSFPADSPK 611
           +++ +PLP     + ++ V       +  +PT A+ L  P +A L SS   +    +SP+
Sbjct: 598 VLNTSPLPKTPEKDRSLNVT-----PSSSTPTPASVLAPPSSASLSSSKDANRSVPESPR 652

Query: 612 PVPLAVVSLD 641
                 V+LD
Sbjct: 653 REKKNRVTLD 662


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +3

Query: 390 PLCTLGTKHRAPADIIDRAPLP-PNRVSNETMKVVVFQRRSAKRSPTYATPLMSPYNARL 566
           P+ T   +   P     RA LP P     E ++V      +A+   T +T +  PY ARL
Sbjct: 366 PMYTYYERDAYPLPPSARAHLPFPVNFPKEELEV----ENNAQNGYTVSTEITDPYLARL 421

Query: 567 ESSSTGSSF 593
            S S   +F
Sbjct: 422 PSPSLRGTF 430


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 185  SPYAY*TSGSSQLLPFCSTRGF 250
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,079
Number of Sequences: 5004
Number of extensions: 60776
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)