Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0073
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0221 + 5962606-5963197,5963711-5963837,5963994-5964100,596... 30 1.6
03_04_0006 + 16257288-16259522 30 1.6
05_03_0582 - 15738503-15739301,15739385-15739642,15740585-157406... 30 2.1
12_01_0843 + 7891622-7892524 29 3.7
06_03_0854 + 25400855-25403741,25406174-25407708 29 3.7
08_02_0203 - 14231134-14231907 29 4.8
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 4.8
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 28 6.4
12_02_0077 - 13288916-13289659,13289689-13289691 28 8.5
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 28 8.5
>09_02_0221 +
5962606-5963197,5963711-5963837,5963994-5964100,
5964185-5964328,5964700-5964822,5964921-5965103,
5965540-5965718,5965797-5965823
Length = 493
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 498 QRRSAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWESR 668
QR S ++ Y TP + Y A SSS GSS P P+A++ + E R
Sbjct: 290 QRSSFEQKTNYQTPASALYGAYEGSSSQGSSSGYGEPPKDPVALMEFYMKKAAQEER 346
>03_04_0006 + 16257288-16259522
Length = 744
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +3
Query: 507 SAKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 662
+A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 161 AARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>05_03_0582 -
15738503-15739301,15739385-15739642,15740585-15740670,
15740879-15740960,15741044-15741213,15742081-15742194,
15742984-15743082,15743171-15743249,15744604-15744710
Length = 597
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/54 (33%), Positives = 22/54 (40%)
Frame = +3
Query: 453 PPNRVSNETMKVVVFQRRSAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 614
PP S +T + F S K PT A+P+ P N R S P S P
Sbjct: 487 PPPWASEDTAESNPFIAASLKNQPTSASPVNVPLNLRPLQQSNSFGVPLRSAGP 540
>12_01_0843 + 7891622-7892524
Length = 300
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +3
Query: 444 APLPPNRVSNETMKVVVFQRRSAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPL 623
AP P V+ +T+ VV + +R L SP SSS+G + SP P P
Sbjct: 66 APAPAPSVAGKTVPKVVGDCKEMEREKEKEKSLSSP-----SSSSSGMTSVESSPPPPPS 120
Query: 624 AVVSL 638
A++ L
Sbjct: 121 AMLPL 125
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 510 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 635
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>08_02_0203 - 14231134-14231907
Length = 257
Score = 28.7 bits (61), Expect = 4.8
Identities = 24/67 (35%), Positives = 33/67 (49%)
Frame = +3
Query: 405 GTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSAKRSPTYATPLMSPYNARLESSSTG 584
G HR ADI P PP+ + E + + R S R A P + +A + SSS+G
Sbjct: 196 GGSHRVVADI----P-PPSGLLVEGPNHIRYYRGSCYRLVMQAPPPLDD-DAEMTSSSSG 249
Query: 585 SSFPADS 605
S P+DS
Sbjct: 250 SPGPSDS 256
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 389 TTLHAWNETPCARRYY 436
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 705 PRHLISDAHEWINEIPTVPIYYLAKPQPRE 616
PR + D EW N PT+ ++ + +PRE
Sbjct: 1397 PRTVECDEGEWYNNFPTIDENHVQRNKPRE 1426
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 567 ESSSTGSSFPADSPKPVPLAVVSLDSR 647
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +3
Query: 537 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 644
PL+ P AR SSTGSSFP S P ++ L S
Sbjct: 47 PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,405,624
Number of Sequences: 37544
Number of extensions: 449687
Number of successful extensions: 1286
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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