Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0073
         (715 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77947-1|AAB41404.1| 2416|Drosophila melanogaster adenomatous po...    33   0.51 
AE014297-4275|AAF56820.1| 2417|Drosophila melanogaster CG1451-PA...    33   0.51 
AY118524-1|AAM49893.1| 2486|Drosophila melanogaster LD22609p pro...    30   2.7  
AE014298-2269|AAF48533.3| 2486|Drosophila melanogaster CG9056-PA...    30   2.7  
AE014297-2568|AAF55584.1|  950|Drosophila melanogaster CG7709-PA...    29   8.3  

>U77947-1|AAB41404.1| 2416|Drosophila melanogaster adenomatous
            polyposis coli protein.
          Length = 2416

 Score = 32.7 bits (71), Expect = 0.51
 Identities = 21/69 (30%), Positives = 35/69 (50%)
 Frame = +3

Query: 420  APADIIDRAPLPPNRVSNETMKVVVFQRRSAKRSPTYATPLMSPYNARLESSSTGSSFPA 599
            APA +  +     +  +N  ++V V + + A+ SPT+     S    +  ++S GS   A
Sbjct: 2220 APARLERQGTFVKDEPTNSNVQVPVVETKPAQTSPTHRA---SKLPTKKGTASGGSPSKA 2276

Query: 600  DSPKPVPLA 626
             SPK +PLA
Sbjct: 2277 GSPKRIPLA 2285


>AE014297-4275|AAF56820.1| 2417|Drosophila melanogaster CG1451-PA
            protein.
          Length = 2417

 Score = 32.7 bits (71), Expect = 0.51
 Identities = 21/69 (30%), Positives = 35/69 (50%)
 Frame = +3

Query: 420  APADIIDRAPLPPNRVSNETMKVVVFQRRSAKRSPTYATPLMSPYNARLESSSTGSSFPA 599
            APA +  +     +  +N  ++V V + + A+ SPT+     S    +  ++S GS   A
Sbjct: 2221 APARLERQGTFVKDEPTNSNVQVPVVETKPAQTSPTHRA---SKLPTKKGTASGGSPSKA 2277

Query: 600  DSPKPVPLA 626
             SPK +PLA
Sbjct: 2278 GSPKRIPLA 2286


>AY118524-1|AAM49893.1| 2486|Drosophila melanogaster LD22609p protein.
          Length = 2486

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 447  PLPPNRVSNET-MKVVVFQRRSAKRSPTYA-TPLMSPYNARLESSSTGSSFPADSPKPVP 620
            P PP  +SN T M + +    S  RS   A +PL  P  A +  S+T  SF + S  P P
Sbjct: 1629 PTPP--LSNCTSMGIGMVNAASTARSSCNAISPLSIPATAGIHVSATNPSFQSSSYFPTP 1686

Query: 621  LA 626
            LA
Sbjct: 1687 LA 1688


>AE014298-2269|AAF48533.3| 2486|Drosophila melanogaster CG9056-PA
            protein.
          Length = 2486

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 447  PLPPNRVSNET-MKVVVFQRRSAKRSPTYA-TPLMSPYNARLESSSTGSSFPADSPKPVP 620
            P PP  +SN T M + +    S  RS   A +PL  P  A +  S+T  SF + S  P P
Sbjct: 1629 PTPP--LSNCTSMGIGMVNAASTARSSCNAISPLSIPATAGIHVSATNPSFQSSSYFPTP 1686

Query: 621  LA 626
            LA
Sbjct: 1687 LA 1688


>AE014297-2568|AAF55584.1|  950|Drosophila melanogaster CG7709-PA
           protein.
          Length = 950

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = +3

Query: 435 IDRAPLPPNRVSNETMK-----VVVFQRRSAKRSPTYATPLMSPYNARLESSSTGSSFPA 599
           ++ A LPP+     + K     V  +   ++  +P++ +   S Y A  +S+S+G  +PA
Sbjct: 120 VNNAYLPPSSPQRPSSKYGAPPVSSYLPPASGPAPSFNSAPSSSYAAPSQSASSGGPYPA 179

Query: 600 DSPKP 614
            +P+P
Sbjct: 180 AAPRP 184


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,898,626
Number of Sequences: 53049
Number of extensions: 705065
Number of successful extensions: 2176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2169
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3170136354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)