Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0073
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81486-13|CAE47465.1|  611|Caenorhabditis elegans Hypothetical p...    28   7.6  
U88167-7|AAB42229.1|  378|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AY221631-1|AAP97492.1|  611|Caenorhabditis elegans muscarinic ac...    28   7.6  
AL034391-3|CAE47471.1|  611|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z81486-13|CAE47465.1|  611|Caenorhabditis elegans Hypothetical
           protein Y40H4A.1b protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +3

Query: 426 ADIIDRAPLPPNRVSNETMKVVVFQRRSAKRSPTYATPLMSPYNARLESSSTGSSFPADS 605
           +D++DR      R S    KV  F RRS KR  +  + + S  + R +++  G  +  DS
Sbjct: 274 SDVVDRPSTQSFRNSKMWKKVKKFSRRSMKRDVSSTSIIKSSGSMRKKNNQDG--YVEDS 331

Query: 606 PKP 614
             P
Sbjct: 332 VTP 334


>U88167-7|AAB42229.1|  378|Caenorhabditis elegans Hypothetical
           protein D2092.2 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +3

Query: 423 PADIIDRAPLPPNRVSNETMKVVVFQRRSAKRSPTYATPLMSPYNARLESSSTGSSFPAD 602
           P D+  ++ +P  RVS  +     F   +A RSP   +P  SP  +  ++SS  ++ P  
Sbjct: 266 PLDMSQKS-MPAPRVSTASPDPPSFVLPTA-RSPINTSPSSSPKASSPKASSPKAASPVS 323

Query: 603 SPK 611
           SPK
Sbjct: 324 SPK 326


>AY221631-1|AAP97492.1|  611|Caenorhabditis elegans muscarinic
           acetylcholine receptorlarge isoform protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +3

Query: 426 ADIIDRAPLPPNRVSNETMKVVVFQRRSAKRSPTYATPLMSPYNARLESSSTGSSFPADS 605
           +D++DR      R S    KV  F RRS KR  +  + + S  + R +++  G  +  DS
Sbjct: 274 SDVVDRPSTQSFRNSKMWKKVKKFSRRSMKRDVSSTSIIKSSGSMRKKNNQDG--YVEDS 331

Query: 606 PKP 614
             P
Sbjct: 332 VTP 334


>AL034391-3|CAE47471.1|  611|Caenorhabditis elegans Hypothetical
           protein Y40H4A.1b protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +3

Query: 426 ADIIDRAPLPPNRVSNETMKVVVFQRRSAKRSPTYATPLMSPYNARLESSSTGSSFPADS 605
           +D++DR      R S    KV  F RRS KR  +  + + S  + R +++  G  +  DS
Sbjct: 274 SDVVDRPSTQSFRNSKMWKKVKKFSRRSMKRDVSSTSIIKSSGSMRKKNNQDG--YVEDS 331

Query: 606 PKP 614
             P
Sbjct: 332 VTP 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,555,555
Number of Sequences: 27780
Number of extensions: 346814
Number of successful extensions: 929
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)