Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0072
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    29   0.80 
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    27   4.3  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   9.9  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.9  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    25   9.9  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.9  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    25   9.9  

>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 691 KRQYKSLKDNALLRPGLLPWSMLSN 617
           +RQY SL  NA+L P LLP  +L++
Sbjct: 561 RRQYGSLSSNAVLMPMLLPLCVLTS 585


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 326 LDQSEGETYLRLEEENLDMILDLPTSVTSIKQTLHKRDYQ 207
           LD SEGE +  L E+N          +T I ++LH + Y+
Sbjct: 852 LDGSEGEIFSTLVEDNTREGFGYLDFLTKIHESLHTQGYK 891


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 123 RAVVSCVTSGHASRCPRAGLLGRPTP 200
           R++V   +S H+S+ P+  L   PTP
Sbjct: 257 RSIVKQTSSPHSSKMPKHSLPSSPTP 282


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 673 LKDNALLRPGLLPWSMLSNMNLGIETYTPYVY 578
           ++ N   R  + P  ++   + GI+TY+P++Y
Sbjct: 353 IQANEAYRKAINPGRLVIYPDAGIDTYSPFIY 384


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 436 VPFSICCILNGISSIIEYSLYWLF 507
           VPF + C    +   IEY+LY LF
Sbjct: 276 VPFVVSCFTYFLGDGIEYALYSLF 299


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 396  DFLKCTIRFIAVFGSIQYLLYFK 464
            DFL    RF  +F SI+Y +Y+K
Sbjct: 1152 DFLLKLKRFQELFSSIRYAIYYK 1174


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = -2

Query: 760 IGKTQHEFERHIIARHTTDFECFKRQYKSLKDNALLRPGLLPW 632
           IG+ QH   + +     T        Y +  D  L  P LLPW
Sbjct: 238 IGRIQHPTRKGMFTCWNTRLNTRPTNYGTRIDYTLATPDLLPW 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,367,797
Number of Sequences: 5004
Number of extensions: 68914
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)