Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0072
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0931 - 28912700-28913056,28913245-28913319,28913424-289134...    32   0.64 
10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247           30   2.6  
02_02_0672 - 12814610-12815703,12815743-12816226                       29   6.0  
01_06_1264 + 35854600-35856849                                         29   6.0  

>03_05_0931 -
           28912700-28913056,28913245-28913319,28913424-28913497,
           28913604-28913691,28913785-28913936,28914050-28914209,
           28914303-28914458,28914566-28914784,28915390-28915650,
           28917183-28917389,28917488-28917619
          Length = 626

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -3

Query: 285 RESGYDPRSPHLSHFDKTDPTQARLSEWSAWAYRVVQHADIAKHVLMSHTTLLRDL 118
           R  GYD  SP  S FD+ D T  RL+E+ A    + +      H ++ H T +  L
Sbjct: 163 RSYGYD-NSPRASEFDEHDLTIRRLNEYRARLSSLQKEKSDRLHRVLEHVTEVHSL 217


>10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247
          Length = 722

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 193 GLPSSPARGHREACPDVTHDT-TARPYWSIPTKEIPASLSR 74
           G P SP +G+ +      +D+ T + YWS+P + +  +LSR
Sbjct: 77  GSPDSPFQGNADGYYLSDNDSVTLKDYWSLPVELVDVTLSR 117


>02_02_0672 - 12814610-12815703,12815743-12816226
          Length = 525

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 646 GLLPWSMLSNMNLGIETYTPYVYQYADTGTCIQ 548
           G+L W +  N    ++TYTP V  Y   G  ++
Sbjct: 169 GVLDWMLEKNCRPMVQTYTPIVQAYCRDGRIVE 201


>01_06_1264 + 35854600-35856849
          Length = 749

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +2

Query: 611 VHIAQHRPG*KPWSKQCVVFQ*LVLSLETFKVGCVAGNNVAFE--FMLSFSN*FTVLMIN 784
           +H A+H P   PW+    + + +  S+   K+  V+G++VA E   M +++N F V M  
Sbjct: 390 MHAARHNPNDDPWAPTMSLKEAISASISRGKL--VSGSDVAGEAASMHTYANPFWVEMKV 447

Query: 785 ITKHN 799
           +TK +
Sbjct: 448 LTKRS 452


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,881,904
Number of Sequences: 37544
Number of extensions: 423203
Number of successful extensions: 953
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)