Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0072
         (827 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)                    31   1.5  
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)                     29   4.6  
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)
          Length = 379

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 166 HREACPDVTHDTTARPYWS-IPTKEIPASLSRR 71
           HRE  PD+THD+   P+   +P   + AS+ RR
Sbjct: 268 HREHVPDLTHDSWTVPFTGVVPFTALSASVRRR 300


>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
          Length = 458

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 324 RSK*RRNVLKT*RRESGYDPRSPHLSHFDKTDPTQARLSEWSA 196
           R + R+   K  R+ + ++P    L H  + DP Q+ +S WS+
Sbjct: 50  RKENRKKNTKLMRKRTRWNPSHLSLFHLSEPDPYQSAISTWSS 92


>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +1

Query: 547 SGCKFRCPHIGTRKACKSQYRGSYCSA*TRVEALV*AVRCLSVTCTVA*NIQSRLCGGQ* 726
           SGC  +CP+ GT ++C    + S      R +A V   +C    C      Q+  CGG  
Sbjct: 279 SGCDVKCPNNGT-ESCDQTCQKSAGDCKMRCDAKVCTSKCTDGRC------QAISCGGDR 331

Query: 727 C 729
           C
Sbjct: 332 C 332


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,083,953
Number of Sequences: 59808
Number of extensions: 517974
Number of successful extensions: 1138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)