Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0072
         (827 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077531-7|AAL27240.1|  418|Caenorhabditis elegans Gex interacti...    29   4.1  
AF077531-6|AAC64616.2|  408|Caenorhabditis elegans Gex interacti...    29   4.1  
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec...    28   9.4  
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l...    28   9.4  

>AF077531-7|AAL27240.1|  418|Caenorhabditis elegans Gex interacting
           protein protein10, isoform b protein.
          Length = 418

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 148 DVTHDTTARPYWSIPTKEIP 89
           D +H TTARPY+S P ++ P
Sbjct: 265 DFSHYTTARPYYSRPNRDDP 284


>AF077531-6|AAC64616.2|  408|Caenorhabditis elegans Gex interacting
           protein protein10, isoform a protein.
          Length = 408

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 148 DVTHDTTARPYWSIPTKEIP 89
           D +H TTARPY+S P ++ P
Sbjct: 265 DFSHYTTARPYYSRPNRDDP 284


>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin
           receptor protein 2 protein.
          Length = 1338

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -2

Query: 187 PSSPARGHREAC---PDVTHDTTARPYWSIPTKEIPASLSRRRIF 62
           PSSP+      C   P  T   +ARP  S P   +  +++RR ++
Sbjct: 420 PSSPSSTANVICSTVPQSTASVSARPTQSAPVDPVSQTMARREVY 464


>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
           protein LAT-2 protein.
          Length = 1338

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -2

Query: 187 PSSPARGHREAC---PDVTHDTTARPYWSIPTKEIPASLSRRRIF 62
           PSSP+      C   P  T   +ARP  S P   +  +++RR ++
Sbjct: 420 PSSPSSTANVICSTVPQSTASVSARPTQSAPVDPVSQTMARREVY 464


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,542,823
Number of Sequences: 27780
Number of extensions: 384559
Number of successful extensions: 923
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)