Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0070
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490...    29   4.1  
08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821           28   7.2  
01_01_0094 - 730484-731570,732030-732715                               28   7.2  
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377...    28   9.5  
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    28   9.5  
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552...    28   9.5  
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331...    28   9.5  

>07_03_1231 +
           25047067-25047262,25047876-25048045,25048897-25049030,
           25049122-25049369,25049799-25049904,25049992-25050130,
           25050258-25050385,25050472-25050733
          Length = 460

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 519 LLTKLAHLAPSSDLRLHRSSKPEFSPI 439
           +L  L +LAP  DLR+  SSKP F  I
Sbjct: 258 MLETLVNLAPVLDLRIFSSSKPSFIKI 284


>08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821
          Length = 716

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -1

Query: 612 CCHERPTPFMVSHERFLGALTLRLVHPTAPVLLTKL 505
           C  E   PF   HE    ALTL +  PTA  L+ KL
Sbjct: 324 CIRELAVPFF-HHEVVKRALTLGMESPTAEALIVKL 358


>01_01_0094 - 730484-731570,732030-732715
          Length = 590

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 645 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 550
           + G +LP  P  C + P P +V   RF   LT
Sbjct: 552 VDGLQLPSRPFFCDDEPLPLLVDSYRFSSELT 583


>11_01_0489 +
           3776563-3776692,3776995-3777073,3777532-3777840,
           3778828-3778898,3778975-3779213,3779306-3779383,
           3779734-3780156,3780416-3780661,3780886-3780978,
           3781480-3781527
          Length = 571

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 255 KSIVGTGYRGERLIEPSSSWFRPKFPSG 338
           + + GTG      + PSS+WF P+  SG
Sbjct: 12  RCVFGTGPLPPASLSPSSAWFDPELSSG 39


>06_03_0099 +
           16633928-16638213,16638299-16638386,16638823-16638950,
           16640008-16640278
          Length = 1590

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -1

Query: 681 GWLLRQVSRCTLLSGFRL---PWPPSCCHER 598
           G+LLR  +   LLS  RL   P PP CCH R
Sbjct: 63  GYLLRHSAHFLLLSA-RLRPPPPPPRCCHRR 92


>05_02_0003 +
           5520331-5520476,5520572-5520644,5520762-5520928,
           5520929-5521223,5521531-5521674,5521756-5521890,
           5522004-5522093,5523702-5523809,5523905-5523986,
           5525362-5525417,5525888-5525986,5526090-5526394,
           5526898-5527075,5527167-5527280,5527376-5527507,
           5527614-5527718
          Length = 742

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +2

Query: 518 RTGAVG*TKRSVKAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP 682
           +TG  G  KR +KA +K S+D +    R  QQ G + + +   ++Q+   +S  P
Sbjct: 267 KTGDFG--KRPIKAMEKLSYDAICSGARCIQQQGNNSNMSRSDALQQYHSKSFNP 319


>01_06_1087 -
           34430521-34430899,34432336-34432806,34432926-34433112,
           34433470-34433599,34433794-34434125,34434566-34435050,
           34435185-34435752,34436579-34436640,34437569-34437636
          Length = 893

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -3

Query: 436 KFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNF-GRNQLLDGSISLSPLY 275
           K E  LRSF       + LP     K+ I A++  GN+ GRN    GS  L  L+
Sbjct: 93  KQEETLRSFPDGQRNCYTLPTNRSKKYLIRATFTYGNYDGRNSSESGSPFLFGLH 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,948,508
Number of Sequences: 37544
Number of extensions: 505756
Number of successful extensions: 1105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)