Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0070
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AC091125-5|AAK27884.2|  297|Caenorhabditis elegans Hypothetical ...    29   4.9  

>Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical
           protein F28C1.1 protein.
          Length = 672

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/66 (31%), Positives = 25/66 (37%)
 Frame = +2

Query: 476 RRSDDGAKWANLVSRTGAVG*TKRSVKAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQ 655
           R+ DD   W NL    G  G  +RS    + RS        RS  +      R P RS  
Sbjct: 375 RKDDDAVDWGNLKVGGGNGGMNRRSWSRSRSRSRSRSPPRRRSRSRSRTRDRRRPRRSNS 434

Query: 656 RLTCRS 673
           R   RS
Sbjct: 435 RRRSRS 440


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +2

Query: 575 WDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP*KWMALKRFAYTLPLPARVMLNFN 754
           W T+  V +S Q+ G   +R P+R + R     + P   M ++      P+  R   N N
Sbjct: 9   WKTLTSVSKSGQKKGRRNTRQPVRPLNRFYRIGSSP---MKIEFAGLNAPIRMRETENQN 65

Query: 755 LVS 763
           L+S
Sbjct: 66  LMS 68


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +2

Query: 575 WDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP*KWMALKRFAYTLPLPARVMLNFN 754
           W T+  V +S Q+ G   +R P+R + R     + P   M ++      P+  R   N N
Sbjct: 9   WKTLTSVSKSGQKKGRRNTRQPVRPLNRFYRIGSSP---MKIEFAGLNAPIRMRETENQN 65

Query: 755 LVS 763
           L+S
Sbjct: 66  LMS 68


>AC091125-5|AAK27884.2|  297|Caenorhabditis elegans Hypothetical
           protein Y67D2.7 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = -3

Query: 376 DETVLKFYIDASYPEGNFGRNQLLDGSISLSPLYPVPTIDFTSESLR-SSIRVSPDFDLT 200
           +E +L+  ID   P    GR+ ++D   S       PT    +ES R   +++ P  ++ 
Sbjct: 150 NEAILRMNIDEISPSDTPGRDSVVDSPFSAENFDKTPTHQGAAESTREQQLKIPPPPEIE 209

Query: 199 RHSSPSFGSQHLCSERAFIH*LETRRLGSAKITN 98
            + + +   +H   ++A    L  +  G+ +  N
Sbjct: 210 VNPAIATRFEHAFRQKALGTDLNQQIQGNQQYNN 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,939,749
Number of Sequences: 27780
Number of extensions: 399557
Number of successful extensions: 813
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)