Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0070
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74690.1 68414.m08650 calmodulin-binding family protein low s...    29   2.6  
At1g54730.3 68414.m06241 sugar transporter, putative similar to ...    29   3.4  
At1g54730.2 68414.m06240 sugar transporter, putative similar to ...    29   3.4  
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA...    29   4.5  
At4g08480.1 68417.m01399 mitogen-activated protein kinase, putat...    29   4.5  
At1g74170.1 68414.m08590 leucine-rich repeat family protein cont...    28   6.0  
At2g35890.1 68415.m04406 calcium-dependent protein kinase, putat...    28   7.9  
At2g27810.2 68415.m03372 xanthine/uracil permease family protein...    28   7.9  
At2g27810.1 68415.m03371 xanthine/uracil permease family protein...    28   7.9  

>At1g74690.1 68414.m08650 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 587

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 502 PLGTVIRSPASSFE*AGVLTHLKFENRLRSFR 407
           P  +V + PAS+FE + V T  +FE   RSFR
Sbjct: 282 PKKSVRKVPASNFESSSVQTSFEFEKPKRSFR 313


>At1g54730.3 68414.m06241 sugar transporter, putative similar to
           ERD6 protein [Arabidopsis thaliana] GI:3123712,
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 332

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 483 LMTVPSGPIW*AELALWDEPNVVLRRLK 566
           L  +P  P W A++  W+E  + L+RL+
Sbjct: 119 LFVIPESPRWLAKVGKWEEFEIALQRLR 146


>At1g54730.2 68414.m06240 sugar transporter, putative similar to
           ERD6 protein [Arabidopsis thaliana] GI:3123712,
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 470

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 483 LMTVPSGPIW*AELALWDEPNVVLRRLK 566
           L  +P  P W A++  W+E  + L+RL+
Sbjct: 201 LFVIPESPRWLAKVGKWEEFEIALQRLR 228


>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
           helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
          Length = 542

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 201 VRSKSGETLMEDRSDSDVKSIVGTGYRGERLIEPSSSWFRP 323
           V  + G+ +ME  SD      VG   RG    EP S+W++P
Sbjct: 24  VVEEPGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKP 64


>At4g08480.1 68417.m01399 mitogen-activated protein kinase, putative
           similar to mitogen-activated protein kinase [Arabidopsis
           thaliana] gi|1255448|dbj|BAA09057; contains Pfam
           PF00069: Protein kinase domain
          Length = 773

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/69 (23%), Positives = 28/69 (40%)
 Frame = -3

Query: 361 KFYIDASYPEGNFGRNQLLDGSISLSPLYPVPTIDFTSESLRSSIRVSPDFDLTRHSSPS 182
           K  +D+   E   G   +    +   P+  +P +D    S       +PD ++ R  S S
Sbjct: 375 KEVVDSGTVENRRGIKGVRPSVLKPPPVMKLPPVDLPGSSWDILTHFAPDSEIVRRPSSS 434

Query: 181 FGSQHLCSE 155
             S++ C E
Sbjct: 435 SSSENGCDE 443


>At1g74170.1 68414.m08590 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 1068

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = -1

Query: 720 SV*AKRFSAIHFQ--GWLLRQVSRCTLL-SGFRLPWPPSCCHERPTPFM-VSHERFLGAL 553
           +V   +F+ +  Q  GW+L  +    L  +GF+   P S  + +   F+ +SH RF G L
Sbjct: 501 NVSVNKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKL 560

Query: 552 TLRLVHPTAPVLLTKLAH 499
             R +     + + KL+H
Sbjct: 561 PRRFLKGCYNLTILKLSH 578


>At2g35890.1 68415.m04406 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase, isoform AK1 (CDPK). [Arabidopsis thaliana]
           SWISS-PROT:Q06850; contains protein kinase domain,
           Pfam:PF00069; contains EF hand domain (calcium-binding
           EF-hand), Pfam:PF00036, INTERPRO:IPR002048
          Length = 520

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 604 MTAGRWPWKSESAKECATTHLPKQPALKMDGAEAFC 711
           +T+  WP  SESAK+     L + P  ++   +  C
Sbjct: 351 LTSDPWPQVSESAKDLIRKMLERNPIQRLTAQQVLC 386


>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 660

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 560 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 661
           P KR  D+   VGRS   DG +GS +P+R   R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147


>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 709

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 560 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 661
           P KR  D+   VGRS   DG +GS +P+R   R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,248,308
Number of Sequences: 28952
Number of extensions: 384699
Number of successful extensions: 908
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)