Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0069
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    66   2e-12
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   3.1  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    24   9.4  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    24   9.4  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 66.5 bits (155), Expect = 2e-12
 Identities = 28/51 (54%), Positives = 36/51 (70%)
 Frame = +3

Query: 102 PLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDSYI 254
           P   GL  N  +  IQF+ +FIGVNI F PQHFLGL G+PRR  DYP++++
Sbjct: 404 PKMFGLMYNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPEAFV 454



 Score = 33.5 bits (73), Expect = 0.015
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +1

Query: 1   DITLHDTYYVVAHFH 45
           DI  HDTY+VVAHFH
Sbjct: 371 DIAFHDTYFVVAHFH 385


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -2

Query: 303 TDNREIYEPNEEIIFHEYMSLDNLNIVEVFQLNLKNVVEKMLYLLQ 166
           T NRE+ E NEEI+    +++ +  I    +L+L+N +  +L  L+
Sbjct: 452 TTNREVEEENEEILL-VLLNIISSVIGRNAELDLENPISSLLPALE 496


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 134 YTKNSIFYNIYWSKYNIFSTTFFR 205
           YT  S F    W  Y+IF + FF+
Sbjct: 256 YTAGSWFMLFIWIVYSIFLSIFFK 279


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 110 YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIF 232
           +RPF KFL  K  IF + YW +  +  T +      T  I+
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGLLNGTGWIY 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,447,808
Number of Sequences: 5004
Number of extensions: 24602
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)