Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0066
         (746 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    23   2.6  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    23   2.6  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   7.9  

>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 568 ECQKSYHRDNWLVAAK 521
           +C+  +H   W+VA K
Sbjct: 30  DCRYKFHNSRWMVAGK 45


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 568 ECQKSYHRDNWLVAAK 521
           +C+  +H   W+VA K
Sbjct: 30  DCRYKFHNSRWMVAGK 45


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 297 SAERPVVRSYHPRDLP 250
           SA  P+VRSY P   P
Sbjct: 281 SAATPLVRSYAPERYP 296


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,283
Number of Sequences: 336
Number of extensions: 3713
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)