Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0066
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    26   6.6  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   8.7  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   8.7  

>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 621 LCVLNIWIKPAFAFCSTR 674
           LCV ++WIK A AF   R
Sbjct: 414 LCVTDVWIKKATAFSKRR 431


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +2

Query: 473 IGRADIEGSKSNSL*TLGCHKPVIPVVTFLALLLKTLYTK---GSI--GRAFAVPMRTEH 637
           IGR+D+    S+    +  H+  +P+ +F+A +  +L+     G    G  +A   R   
Sbjct: 184 IGRSDVSDLNSDPF-VMFNHRHFLPIASFMAFIFPSLFCGLLWGDYRGGYFYAGVCRLVF 242

Query: 638 LDQASFCLLLHARFLSS 688
           +  A+FC+   A  + S
Sbjct: 243 VHHATFCVNSLAHLIGS 259


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 678 NLAWSKRQKLA*SRCSVRIGTAKARPIDPLV*RVFSKSARKVTTGITG 535
           NL W++RQ+   S CS  +  A  +  D +V     K A +    +TG
Sbjct: 430 NLGWNERQRQCLSSCSSHLSLALQKSSDIVVAAEEVKLATEDIGRVTG 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,893
Number of Sequences: 5004
Number of extensions: 64241
Number of successful extensions: 155
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)